LOC113545207 (LOC108257895)


Basic Information

Item Value
gene id LOC113545207
gene name LOC108257895
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10136989 ~ 10140336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944413.2
GTTAGTAGATCAGCTCATCTACACACGTCTGCCAGACGCTCGAACACACCCCACGGTCACATGACTCAGCTACCTGTCTGTGGAGCAGGCGAAGGCCTAGATGATATCCTACTGAACTTTTTCCAGCTTTTTCCAGCTATGAGGGACAGACTAAGCCATCTTCAGACATTCTCAGCAGCAGTCCAGCATTCATTGAAGGAGCGGCCTGAAGAACCTCCTCAGGAACATAACACTGACCCTGAGATGGAGGCCATATTTAATGAGGCTAATAACATTCGCCGTGACATTCAGCTCATTCTTTTGGATGTGAAGCATCTCGAAGAGCAGAACTCTCCTGTTTGGAATGAGCTACCAAATTCTAGCACTGTGAAGCACGACTCTAATGCCATTGCTGCTAGCATCAAGTCCCGTGCTAAAGACGTGCTTGCACGTCTTCGCAGTATGGATATGCATGCTAGCGAGCTGGAGAAAAAGCATGGGATCAACAGTGCCCTTTCTCGAATCGCACGAACACAATATGCTGGTTTGAGCAGCAGCTTCCGTGATGTGATGATGGAATACAACAGGGCAGAGATGAGCCACAGGGAAATGTGCAAAACCCATATCCAGAGGCAGCTGGAGATTGTGGGGCGAGAGGTGACAGGTGAGCAGATTGAGGAAATGCTAAGTAATGACCAGTGGAACATCTTTAGTGAGAACGTTGTCACAGAGGGGAAAACAGCACGATCTGCCCTCAGCCAAATCGAAAACCGACACACGGAGCTGCTGGAACTGGAAAGCCGCATAAGGAGCATCCATGAAGTGTTTCTAGACATGGCTATGCTGGTAGAAGAACAGAGCAACATGATAGATTACATACAGACAAATGTCCAAAAAACTGATGCAGATATGAAGAATATGCTGGTAAAGCTTGAAAAGGCCAAGAAATATGATAGAAACAACCCCTTCAAGAAGATCTTTTGTAGGAGGCGTTAATCAACGCGTAACTGCACTGTTTATAATTTTTGGACTTTGCTTGCTGACTGTGACTTTGTTGTGATTTTATTGTGTACTGTTTAagagctgcatttttaaaaatttgctttGATATGATATATTAAATGGAGGATAAAATGCCCACATTGACTGTAGCTAAGATATTAATATCGTAGATGAGTTTGTCTTTTGAATAAATcaaccaattttttttatatgtcagGCTGTATCAATGATtttctggattaaaaaaaaaagtttttcctcTCAAATATTTGACTATGTATGTGCGAATTTTGgaggtaataaataaatgatgaatgtTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944413.2 True 1303 mRNA 0.42 2 10136989 10140336

Neighbor

gene id symbol gene type direction distance location
exoc2 exoc2,LOC107721345,LOC107711641,LOC107665386,LOC107659211 coding upstream 15689 10091369 ~ 10121300 (+)
gmds gmds,LOC107711642 coding upstream 111065 9945790 ~ 10025924 (+)
mylk4b mylk4,LOC108257896,LOC101163967,LOC103463388 coding upstream 195594 9917365 ~ 9941395 (+)
ypel5 ypel5,slc30a10,LOC107568027,LOC102210471,LOC102788175,LOC108441457,LOC103458748 coding upstream 464461 9667681 ~ 9672528 (+)
faua fau,LOC108411505,LOC105017549 coding upstream 505880 9627578 ~ 9631109 (+)
LOC117599727 LOC108261516,LOC108257915 coding downstream 30456 10170792 ~ 10186791 (+)
katnbl1 katnbl1 coding downstream 225832 10366168 ~ 10374001 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948 coding downstream 234227 10374563 ~ 10378224 (+)
aven aven coding downstream 243328 10383664 ~ 10412148 (+)
fmn1 fmn1 coding downstream 362998 10503334 ~ 10527440 (+)
G293110 NA non-coding upstream 72978 10063765 ~ 10064011 (+)
G293095 LOC108257535,LOC107682698 non-coding upstream 98634 10036451 ~ 10038355 (+)
G292929 NA non-coding upstream 268380 9868149 ~ 9868609 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding upstream 520398 9613425 ~ 9616591 (+)
G292756 NA non-coding upstream 524377 9611988 ~ 9612612 (+)
LOC117599717 NA non-coding downstream 58513 10198849 ~ 10210998 (+)
G293350 NA non-coding downstream 396628 10536964 ~ 10537640 (+)
G293345 NA non-coding downstream 411905 10552241 ~ 10553007 (+)
G293380 NA non-coding downstream 420461 10560797 ~ 10561016 (+)
G293411 NA non-coding downstream 469290 10609626 ~ 10609846 (+)
G293016 ileu other upstream 186258 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 957816 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 1139993 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 1602489 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 2062545 8043386 ~ 8074444 (+)
LOC117599798 NA other downstream 18619 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 540974 10681310 ~ 10682664 (+)
G293528 NA other downstream 878070 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 1421086 11561422 ~ 11579249 (+)
rps29 NA other downstream 1583645 11723981 ~ 11725332 (+)

Expression


Co-expression Network