chrna2b (chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726)


Basic Information

Item Value
gene id chrna2b
gene name chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7348155 ~ 7356914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944424.2
CACTAGAATGGCAGTGGAAGAAAAGTTGCCCGGGAAACACTGAGTGCGCACATGGAGAGCTAAATGAAGCCGTATGATGGAGCGCGTTGGGAATCTCCTGGTCTCACTGAGGAGCGCTCTGCTCTGGAGCATCCTGTGGCAATCAATGTCCTGTTATGAGAAGACTCATTCACATGCTGAGGATGAACTCTTCAAGAAGCTTTTTGTCGGATACAACAAGTGGTCACGGCCTGTGCCAAACACATCAGACGTGGTCATCGTTAAGTTTGGCTTGTCCATCGCCCAGCTCATTGATGTGGATGAGAAAAATCAGATGATGACAACCAACGTCTGGTTGAAGCAGGAGTGGAATGACTATAAATTGCGTTGGAAGCCCTCTGATTATGACAATGTGACGTCCATCAGGGTGCCATCAGAGCTCATCTGGGTTCCAGACATTGTGCTGTACAACAATGCAGATGGGGAGTTCGCTGTGACCCACATGACCAAAGCTCACCTCTTCTATACAGGCAAAGTGCGCTGGGTTCCCCCTGCCATCTACAAAAGCTCCTGCAGCATTGATGTCACCTTTTTCCCCTTCGACCAGCAGAACTGCAAAATGAAGTTTGGCTCATGGACATATGACAAGGCCAAGATCGACTTGGAGCGCTTAGAGACCACTGTGGACCTCAAAGACTACTGGGAGAGTGGTGAATGGGCTATCGTCAATGCTGTGGGAACATACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCAGACATCACGTACTTCTTCATCATCCGACGCCTTCCTCTGTTCTACACCATCAACCTGATCATCCCATGtctgctgatctcctgcctGACTGTGCTGGTCTTCTACCTGCCGTCGGACTGTGGTGAGAAGATCACGCTGTGCATTTCTGTTCTCCTCTCGCTCACCGTCTTCCTGCTGCTCATCACAGAGATCATCCCTTCCACGTCATTGGTAATACCACTCATTGGCGAGTACCTGCTCTTCACCATGATCTTTGTCACGTTGTCCATTATCATCACCGTGTTTGTGCTGAACGTGCACCACCGCTCACCAGGCACGCATAAGATGCCAAGTTGGGTGCATACTATCTTCCTCGATATCATCCCACGTTGGCTGTTCATGCGCAGGCCGGCTCCCTATGGACGTCGTCGGCAGAGGTTACTGCTCCTGAAAAGTCGAAGGTCACGAGGACTTGGGGCTCCCACTGGATCATGTTTAAGCACTTCAGCCAGCTGGTTCAGGGAGGTGGCTGAGGATGAGGAAGCACACACACGATGCTTCTATGAAGACCTAGAGCTGGGCACGCTGTCTtctaatttctctctctccttccgcCCTCCTTCTCCTCGTCCACCCGGCTCCACCCCAACTCCTTCTCCTCCACTCCCTCCTCAtccttcttctctgtctttGAAACATGGACCTCCTATGAGACATGATGCACTGCTGGGTGCCAGGCATCCAGGGGGTAGAGTGAACCATACTATGCGGCAATCAGACAATGAGcggttctctctgtctcccagCATCATGCAGGCTCTGGAGGGAGTTCACTACATTGCGGATCATCTGAGAGCACAAGACGCCGACTTCAGTGTTAAAGAGGACTGGAAGtatgttgccatggtgattgATCGGATCTTCCTGTGGATGTTCATCATCGTTTGTCTGTTGGGTACCATCGGCCTGTTCCTTCCCCCATGGCTGGCTGGCATGATATAGAGCCACTTACATAAACTTGAAGACAAGCAGTACGGGTGCTGTGGAAATACTCGTCATTACAGACAGTGAGCGAGCCTGCCACGTGGATGAATAATATGGAAACTGtgcaaaaatatttgaatgaaGAGCAAGAAATTCATCATGGAGCAGAATGTCTGTCAGCACTGTGCAAGAGCCCAGAAAACAAATTTATCTTTCAATGTAAAGCCTTGCAATGAATACTGATGAATAAAA

Function

symbol description
chrna2b Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus medulla oblongata; interpeduncular nucleus tegmentum; neurons; and spinal cord. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy 4. Orthologous to human CHRNA2 (cholinergic receptor nicotinic alpha 2 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like isoform X1

GO: NA

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944424.2 True 1978 mRNA 0.50 6 7348155 7356914

Neighbor

gene id symbol gene type direction distance location
si:ch211-142k18.1 LOC108257612 coding upstream 3240 7339079 ~ 7344915 (+)
nme6 nme6 coding upstream 72009 7263926 ~ 7276146 (+)
atraid atraid coding upstream 98333 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 128499 7208687 ~ 7219656 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 201021 7118691 ~ 7147134 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 121368 7478282 ~ 7502438 (+)
trnac-gca_25 NA coding downstream 232454 7589368 ~ 7589439 (+)
six4b LOC108258176,LOC108434989 coding downstream 266307 7623221 ~ 7629922 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 279271 7636185 ~ 7639104 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 367392 7724306 ~ 7767694 (+)
G291300 NA non-coding upstream 86044 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 120928 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 289572 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 365351 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 408536 6939191 ~ 6939619 (+)
G291380 NA non-coding downstream 47514 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 132394 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 165010 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 253573 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 308215 7665129 ~ 7666009 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 328469 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1188115 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1546462 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2368755 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2738554 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 420683 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 686472 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1131733 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1636599 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1717114 9074028 ~ 9179173 (+)

Expression


Co-expression Network