LOC113545215


Basic Information

Item Value
gene id LOC113545215
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6850356 ~ 6868031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944427.2
GTAAGCTGTAAGCTATCTTGTTATAAGCATCAATAAATGTGGTTAAGCAAATAGACTGTGGTGAAGGAGATTAGGAAAGGAAAAGCCTGAGACAATTTCTACCAGTGACTCAtagaactgaaactgaaacactttctcttCCTGCTTCACAATGACGTCAGTGATGTCAGAGAAGGACCACTCTTCAGCATCCACACAACCGCACCCAGTCTGAGAAAAAAGGAGGAAAATCATTCAGACTCATTGTGTCTTCAGTTGTACAgcaatgaatgaacaaacaggTCCTGAAGCTGCTTCTGCAAAACATGCAAGGAATAGGCAAAATGAAGTTGAGCAGTTGAAGACCACTGATAGTTTGCCAGAGCATAAAGGAGCTGGTGGTGACACTATTTCCATAATGATGGTGGAAGAAACTAAAACAAAATCCTCAGGTGGTACTGCAAGAGGTTTCCTAAACCGCAtgttaaagacaaaaaagtTGGGCAAAAAACATTCCTCAGAATCTAATCCAGagcATAAGGGGGTTGGAGGTGACTCTATTTCCACAATGATGgttaaacaaactaaaaaatcCTCAAATGGTTCTGCAAGACCTTTCTTAAATctcacattaaagaaaaaaaagtcagacaAAAAACATTCCTCAAAATCTAATCCAGAGCTCTTGGATTTCAGTCAGAATCTGGAACTGGGATATTTGGCAGAAGCTAGCCAGCAACTTTTGGAAAGGGAGAAGTGCCTCTTTAGCTCACAGTCATCAGCTAAGGAGGTGATTTGCacagaagatgaaaaaaaaggtttgaggAAGGACTATGAGACTCTGATGGATCATCTGAAGATGGCTGTCCATGATTCCTTTAACATGGAGAATCAGGAGATGCTGAGAAGTGCTATAATGGCTATAGCTCAGCAGGAGGAACAAGACAGGCACTGGGAAGAGGCAGCAGAGGAGTCCCCATGTTGGCGCCCCATGAGATGCCGACAGATCCATGACATGATAATTAAGGAGGTGGTGGAGGTACGGCTGCAGCAAGTAAATGAAGAAGAGCTTGACACAGACGTGCTGAAAAGAGAGGTGGTACAGATAGGCAGTGTCATTCAGAATGACCTGCTTCAAGTTGTCAATCACGTGCAGAAATGTTACTCATCAGATTTCAACGTGTGTGACATGTATGCTCAGCTCTATCATCAAGCTTTCTCAACAAAACTCAAGAAACTTCTACAGTTCAGTGTTACTGGGGAGGATTACAGATTCATactgaaacaaataaacaattatccaaaGGCTATTTTGCAACAGGACGAACTGAACTCACACATCACAATTGAATCATTAGGAGCTTTGTTAACTGAGGAAGATCATAAGTCACTGGAGGAGCAATATTTGTCACACAAAGAGAAAGAAGTCAAGACTTGGTTGTCCAATGCTCTTAAGTTAAAGGAGGCAGACTGGCAGGCTAATAAAAAACCTGAACTTATTGatgaatattatttttgcaaTCTCGCTTTAGATGTTATAGCGGTTATTGATGGAGCCATAAAAGACGTTGGAGACTTTCTGGGAAATGATAAAGCACAGCAAATGTTTTTGCAGATGGGCGGCTTCCTAATGAGTTATAAGAACTCCGTGGAGGAATTTCTTAAATGCCAGCAGACGAACATGGCTGAAATCATGAAAGCCCAGCTGTTTAATATCAGCAAGATAAGGGAGCGTATAGAGAAACAAGAGAATCTTCCAGATGAAATGAAAGTAGCCTGGCTGTCAATTGCATCAGAGCTAAGAGACTCCAGTCACAGTTACTTCCTCAGCCCCATACACAAGGAACTCAAGGTGAATTACCGTGAATTGTGGACTCCAGCTTGGTTTTCAAAGCATGAAGAGATTATTGGCAAACTAGAAGCTACACTGAATGAGAAAATTCATTCTTTGAAAGGCCTACACAGTGCCTGTCTAAAGGAGCTGTTGAGTCAGCTGCATTTTGAGGTGATGATTGAATATGTCAAAAGGATGCTAAAGAGGAAACTGAAACTAAAAAACAAGGACAAGCAGGAGGCAGCTGCATGCTTTCTGTGTCAGGACAGTGACAGAATCAACACACTGTTTTACACAAATGGATCGGAGAAGGAATGGCTATCAGTAATTTTGCCCAGAGTTTCAGAAGTGATAAAGGAGCAAGATCCAGAAAACCTTGAACTAGAAATCTGCGTGCTGTTAAAACACCACCCTGACCTCAGTGAACGGCAGGTCTGTCAGCTCTTGCAGCTGAAAAACAGATGTCCAGATGTGCACATGGTCAGAGAATGTTACCATCAGTCTACGAAAAATCTGGAAGACTCTGAGCCTACTCCAGCTTTCTTCTGCCATGTGCCTGGGAGTATCTCATTGAGcttcttttcttgtttctgCACACTCCCGTTCTTTCGTTTGAATGAAGTGCCATGTAGGAAATGATAACAACTACTCTTTCATGTTTGTCACAATACAACAAAAATCAAATGACAAAGAGGCAAGCCACAGAGTTGCATAattaaatttacttaattaaagttttaaaaaaaaagaaaagagaattaTACAATATTTGTGGGTATCATTTTATGGGATTAAGTAAAAGGATCTGACCAAATTCAGTTTTAGTGTAAATTGTAGCTCAGGATAAGCTCAGATTGGTCAAATGTTTGACCCAACAATGTTGCTAACTTTGCTGTAAGCTGAATCTGACCATGCAATGTGGAGTTAATGCCTAATAGCCTCAAAAACCTAATTGGTATGTGTAGTTCAAACATGATAATGACCTTTGTGATGCAGGCATTAACATAAAGACTGCTAATTAACATGCTACAAGGAAGATGTGATTGTGACTTGATGTGATGGTGCCTGTTCTGGATGTATGGCAAGTGAATAAGCTTGCGCTGTGGGAATGTGACTCAGCAGCTGGCTGGACAGAATTCTTTTGCAAATTTGCATGGCATTTGCAAGACAGAAGAATTCCATGTATGGTACACTATTGCAGCATTGCATCTGTCaacttttcctctctttccagCCGAAAGAAATTAAGGTCATTCCCATCCTCCATCACTGGATGGTTGACGCCTGTCTTGCTGCTCATGGATATGACGTTGTTTATGTTTTAGGTGTTTTTTGGGTTGCTGAATATAAGTGAGATTCTAAGATCACAGCCACAAGTAAATGTCTCTTAGTTGGAGCAAATATGGCTGTAAGATTAAGTGTGAATATCAAAGCCCCTAAACCTAAAGAAAGCCCAATTTTAATATGAAAGGGCACAGAACATAAGCAGGCAGTTTGAAATAGACTAGTGTTTTGTGTGTCCATGGCTGTGTTCCAGGGGTACCTAAATTCTGCTGACAAAACTAGGCATCTTTCAGCATTTTATATGGGTAGGTATAATGCacttattaaaatacattatcatttctatggtGATGCTCCACACAATCtaagcataataataaacacattaaaaatgtgtcgttatttagcaaagaaaaccaAAAGTTTTAGTAAAAgttgttatatttgtttatatggtaaagctttctgtaaggaaacgttaacttaatggaaggagtctccaatgtcagtgctttgtaacaggtaaagctgtaaaattAAGCTTACCAACACACCACCGCCTTCAGAACAGATGATCTTGTGCTTTGGAGTGTCTTGATaacaagctgattttttttctgatatttatttatttatttatttttttgtcttattgaagaaaaaaagtgaggctggtgaggtagTGACTGTTTATACCTCCtacaatgtaagtgacaacaggagcttacttgtttcatgaatgtttcacagcattaaatgtaactataaaaagtatgatgggctgttctttaataaataaaaataataaattgttggcaaattgctgtgatataagaagaataata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944427.2 True 3942 mRNA 0.39 14 6850356 6868031

Neighbor

gene id symbol gene type direction distance location
tnfaip2a NA coding upstream 1823 6833386 ~ 6848533 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 43015 6797339 ~ 6807341 (+)
LOC113545329 LOC108257524 coding upstream 150539 6691634 ~ 6699817 (+)
taf4b LOC108258144 coding upstream 174002 6661880 ~ 6676354 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding upstream 189772 6640967 ~ 6660584 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding downstream 16272 6884303 ~ 6893353 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding downstream 37490 6905521 ~ 6911188 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 119078 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 155976 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 185927 7053958 ~ 7057627 (+)
G291037 NA non-coding upstream 15658 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 122842 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 427390 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 507816 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 612440 6237714 ~ 6237916 (+)
LOC117599731 NA non-coding downstream 62338 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 71160 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 113932 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 190352 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 352275 7220306 ~ 7227227 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 690316 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1048663 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1870956 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2240755 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2512057 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 144711 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 909566 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1175355 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1620616 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2125482 8993513 ~ 8996996 (+)

Expression


Co-expression Network