yy1b (yy1a,LOC108258103,LOC108411685,LOC107712210,LOC101066055)


Basic Information

Item Value
gene id yy1b
gene name yy1a,LOC108258103,LOC108411685,LOC107712210,LOC101066055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9463981 ~ 9474164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944433.2
ctcCATCCGTCATAAATCTGCTGCCAGTGAGCGTTTTTCTCAAATCTCGCGAGATCTGAAACTGGAGTGGAGAAGCGACGTGATCTCATTGCGAGGCGAAGTGGAGTTATTTGTATTATCGAAGAGAAGAGGGAGGGCAGCTATCGTTTCTCTGagggggtgtgtgtttgtggggcAACGAGTgctgcgtgcgtgcgtgcgcgcgcgtgtatgtgtgtgtgtatatgtatatgtgtatgcaagcaagcaagcaagctgGCGGAATTCAACATGGCATCGGGCGAAACGCTGTATATCGAGACAGACGGCTCGGAGATGCCGGCTGAAATAGTGGAACTTCACGAAATAGAAGTGGAGACAATTCCGGTGGAAACGATCGAGACCACGGTGGTCGGGGGCGACGATGATGACGAACACCAGCCCATGATCGCGCTGCAGCCGCTCGTAACAGACGACCCGAGTCAGGTCCACCATCAGGAGGTGATCCTGGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGACGAGTCCGATCTGCGGACAGACGATGGGTTTGAGGACCAGATCCTCATCCCGGTGCCCGCGCCCGGGTCAGAGGAGGAGTACATCGGACAGACTCTGGTCACGGTAGCCGGGAAGAGTTCCGTGGGCCGGATGAAGAAGGGGGGAAGCGGTGGAAAGAAAGCGGGTAAAAAGACGTACCTGAGCGCTAGCGAAGCcactgggagaaaatgggagCAAAAACAGGTTCAGATAAAGACGCTGGAAGGCGAATTCTCCGTGACGATGTGGGCGTCGGATGATAAAAAGGACATTGACCATGAAACAGTGGTGGAGGAGCAGATTATTGGAGAGAACTCTCCTCCAGATTACTCTGAATACATGACTGGAAAAAAACTTCCTCCCGGCGGCATCCCGGGTATCGACCTCTCTGACCCCAAACAGCTTGCGGAATTTGccagTAACAATAGCGGCTCTTTGGGTCACACTTCAGTACGAATGAAACCACGAAAGGTCAAAGAGGATGATGCACCCAGAACGATAGCCTGTCCACACAAAGGATGCACTAAGATGTTCAGGGATAACTCTGCAATGAGGAAGCACCTCCACACCCACGGGCCCCGGGTTCATGTGTGCGCGGAGTGCGGGAAAGCCTTTGTAGAGAGTTCAAAACTCAAGCGCCACCAACTTGTTCACACCGGAGAAAAACCTTTCCAGTGCACTTTTGAGGGCTGCGGGAAACGCTTCTCCCTGGACTTTAACCTCCGCACACATGTACGAATTCACACCGGAGACCGCCCATACGTCTGTCCTTTCGATGGCTGCAATAAAAAGTTTGCTCAGTCTACCAATCTCAAGTCGCACATCCTAACACATGCGAAAGCCAAAAACAACCAATGAGCAGCTCTGTTCTGCATTTTTCCTTTTACACCTGAATCCAGCCTCAACGTGACAGCATCTTAAAACACTGGAGGTATGAACTGTGCTCTTCTGTAGTTCTCCTAAGGAGTGCGGAAATGATGACCCAAAGGACTTGGGGTTTAATTACGGCATATTGTAAAAGGCACAAAGTGAAACATTGGGAACCCCTGTATTCTTGAATCAGCCCGCTAAGCGTGTGGCCCTTACTGAGGAGCAGAGCACGGCCGTGTCAGGCCCAGACGCCCGTCCCACTTTGTGATGGCTTACTGCAGCCAGCAGAATGATGGAACTCATGGACACTCATCTGTAGACATTGCTTTTTTCCACAGTAAGGAACAAGAACATTTTCGCAGTCCATTTCTGTTCACTATTACATAAATTTCACCAGTCTGCATAGATATAgcttttaattttgtatttttccaaGTGTGCATATTGTACACTTATTTTTGGAATGTACTTAGTAATGCAACCTTGTGATTTATTCTTTATCCCTGAGGATTTAAGGTTTTGCTTAGGGTGTGTTCTTGAAAGGGTTGATTATAGTTACTGTAAGACAATACTTCAAAAGTATTTTATGTAAAAagttatctttttttgtttcattttctctttggTTGTAATCTAACCATTGAATAATCTTGTATACGTGTATTGTATGGCTGTATGAAGATCATGTAGAAATGGACAGCTGTGTGATTTCAAGTGTTTACTGCTTTAAAGCATTCAGTCATCAGttgctttttcttttgtcaCATGGTCTCACATGGCAAAGAAACATTACTTCACTTTTAAACCCATATATTGAACCACATCTCACAATAAACCACAATGTGAGagttcatttttctttgtttgtaatGTATTGTAAAGGCCTAAATCATGAAATATTCTTTGTTAATAATTACATTGTCATGTATTTCAGTCtacaattaaaaacacaaatgtctcAGTGTT
>XM_026944434.2
tcCATCCGTCATAAATCTGCTGCCAGTGAGCGTTTTTCTCAAATCTCGCGAGATCTGAAACTGGAGTGGAGAAGCGACGTGATCTCATTGCGAGGCGAAGTGGAGTTATTTGTATTATCGAAGAGAAGAGGGAGGGCAGCTATCGTTTCTCTGagggggtgtgtgtttgtggggcAACGAGTgctgcgtgcgtgcgtgcgcgcgcgtgtatgtgtgtgtgtatatgtatatgtgtatgcaagcaagcaagcaagctgGCGGAATTCAACATGGCATCGGGCGAAACGCTGTATATCGAGACAGACGGCTCGGAGATGCCGGCTGAAATAGTGGAACTTCACGAAATAGAAGTGGAGACAATTCCGGTGGAAACGATCGAGACCACGGTGGTCGGGGGCGACGATGATGACGAACACCAGCCCATGATCGCGCTGCAGCCGCTCGTAACAGACGACCCGAGTCAGGTCCACCATCAGGAGGTGATCCTGGTGCAGACCCGGGAGGAGGTGGTCGGCGGGGACGAGTCCGATCTGCGGACAGACGATGGGTTTGAGGACCAGATCCTCATCCCGGTGCCCGCGCCCGGGTCAGAGGAGGAGTACATCGGACAGACTCTGGTCACGGTAGCCGGGAAGAGTTCCGTGGGCCGGATGAAGAAGGGGGGAAGCGGTGGAAAGAAAGCGGGTAAAAAGACGTACCTGAGCGCTAGCGAAGCcactgggagaaaatgggagCAAAAACAGGTTCAGATAAAGACGCTGGAAGGCGAATTCTCCGTGACGATGTGGGCGTCGGATGATAAAAAGGACATTGACCATGAAACAGTGGTGGAGGAGCAGATTATTGGAGAGAACTCTCCTCCAGATTACTCTGAATACATGACTGGAAAAAAACTTCCTCCCGGCGGCATCCCGGGTATCGACCTCTCTGACCCCAAACAGCTTGCGGAATTTGccagAATGAAACCACGAAAGGTCAAAGAGGATGATGCACCCAGAACGATAGCCTGTCCACACAAAGGATGCACTAAGATGTTCAGGGATAACTCTGCAATGAGGAAGCACCTCCACACCCACGGGCCCCGGGTTCATGTGTGCGCGGAGTGCGGGAAAGCCTTTGTAGAGAGTTCAAAACTCAAGCGCCACCAACTTGTTCACACCGGAGAAAAACCTTTCCAGTGCACTTTTGAGGGCTGCGGGAAACGCTTCTCCCTGGACTTTAACCTCCGCACACATGTACGAATTCACACCGGAGACCGCCCATACGTCTGTCCTTTCGATGGCTGCAATAAAAAGTTTGCTCAGTCTACCAATCTCAAGTCGCACATCCTAACACATGCGAAAGCCAAAAACAACCAATGAGCAGCTCTGTTCTGCATTTTTCCTTTTACACCTGAATCCAGCCTCAACGTGACAGCATCTTAAAACACTGGAGGTATGAACTGTGCTCTTCTGTAGTTCTCCTAAGGAGTGCGGAAATGATGACCCAAAGGACTTGGGGTTTAATTACGGCATATTGTAAAAGGCACAAAGTGAAACATTGGGAACCCCTGTATTCTTGAATCAGCCCGCTAAGCGTGTGGCCCTTACTGAGGAGCAGAGCACGGCCGTGTCAGGCCCAGACGCCCGTCCCACTTTGTGATGGCTTACTGCAGCCAGCAGAATGATGGAACTCATGGACACTCATCTGTAGACATTGCTTTTTTCCACAGTAAGGAACAAGAACATTTTCGCAGTCCATTTCTGTTCACTATTACATAAATTTCACCAGTCTGCATAGATATAgcttttaattttgtatttttccaaGTGTGCATATTGTACACTTATTTTTGGAATGTACTTAGTAATGCAACCTTGTGATTTATTCTTTATCCCTGAGGATTTAAGGTTTTGCTTAGGGTGTGTTCTTGAAAGGGTTGATTATAGTTACTGTAAGACAATACTTCAAAAGTATTTTATGTAAAAagttatctttttttgtttcattttctctttggTTGTAATCTAACCATTGAATAATCTTGTATACGTGTATTGTATGGCTGTATGAAGATCATGTAGAAATGGACAGCTGTGTGATTTCAAGTGTTTACTGCTTTAAAGCATTCAGTCATCAGttgctttttcttttgtcaCATGGTCTCACATGGCAAAGAAACATTACTTCACTTTTAAACCCATATATTGAACCACATCTCACAATAAACCACAATGTGAGagttcatttttctttgtttgtaatGTATTGTAAAGGCCTAAATCATGAAATATTCTTTGTTAATAATTACATTGTCATGTATTTCAGTCtacaattaaaaacacaaatgtctcAGTGTT

Function

symbol description
yy1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; circulatory system development; and positive regulation of gene expression. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in several structures, including eye; heart; myotome; notochord posterior region; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor).

NR:

description
PREDICTED: transcriptional repressor protein YY1-like isoform X1

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09201 YY; transcription factor YY

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944433.2 True 2376 mRNA 0.47 6 9463981 9474164
XM_026944434.2 False 2339 mRNA 0.47 5 9463982 9474164

Neighbor

gene id symbol gene type direction distance location
evlb evlb,LOC108258102,LOC108411639,LOC103359910 coding upstream 448 9426445 ~ 9463533 (+)
LOC113545338 LOC108257621 coding upstream 39412 9419110 ~ 9424569 (+)
LOC113545286 LOC108258122 coding upstream 51746 9389746 ~ 9412235 (+)
LOC113545203 NA coding upstream 78186 9384881 ~ 9385795 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding upstream 125621 9336792 ~ 9338360 (+)
entpd5b LOC108257529 coding downstream 21081 9495245 ~ 9505126 (+)
LOC113545265 c25h14orf37,LOC107717645,LOC107659812,LOC107574488,LOC107713862 coding downstream 68244 9542408 ~ 9551941 (+)
LOC113545275 LOC108257654 coding downstream 100187 9574351 ~ 9577558 (+)
prpf39 prpf39 coding downstream 144666 9618830 ~ 9626110 (+)
faua fau,LOC108411505,LOC105017549 coding downstream 153414 9627578 ~ 9631109 (+)
G292643 NA non-coding upstream 48405 9414551 ~ 9415576 (+)
G292654 NA non-coding upstream 55267 9408492 ~ 9408714 (+)
G292102 NA non-coding upstream 758737 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 878079 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 880504 8582950 ~ 8583477 (+)
G292765 NA non-coding downstream 80273 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 113536 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 137824 9611988 ~ 9612612 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding downstream 139261 9613425 ~ 9616591 (+)
G292929 NA non-coding downstream 393985 9868149 ~ 9868609 (+)
LOC113545247 plcb1,LOC108258091 other upstream 284808 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 466985 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 929481 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 1389537 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1681973 7777597 ~ 7782008 (+)
G293016 ileu other downstream 429586 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 684791 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1207146 10681310 ~ 10682664 (+)
G293528 NA other downstream 1544242 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 2087258 11561422 ~ 11579249 (+)

Expression


Co-expression Network