eif5 (eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513)


Basic Information

Item Value
gene id eif5
gene name eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6884303 ~ 6893353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944472.2
GAAGAATGAACCAATGGCGTTAGCCCATAGTGACGGGGGCGGGGTTAAATACCCAACTTAACATTCGGAAGCACGCTGCTATAGAAACTGACTTGGGAGACGCGGTGTGTAGAGatCCCCGGGTTTGAGGGCGTCTCAGAGTTTGTTTTCGGGCTTCATCCCTCTGCATTGTAAGGCTTGCTCCAGGCTCTGTGCTCTGCACTGTTCTGTGTAACGCAGTGCTGCATACAGTCCAACTGCTCATCCAAACACTTCATTCATCTCAGGGAGACCAGCGGTGTGTTTATGTCTTTGCTTTACGAAAACGCAGACTATTCGGACGTCAGGAGCTGCGGATGGGAAAGAGCTGTTGGACAGCTGTTGAAACCTGCGTGGGGGGAACTTAGTCTACGAGCTTGCCCCTTGGAGCCTCAGTGGCCAAACCATTTTCATGTCAGAGACAGAGTCTTCTTGCAGTCGTTTATGTCATCCTTTCCTTTCTGGACAGAGAATACGAAAAATTGCCAATTCAAGATCTTGTCTTGCTGATAAACCCTATAGTAAGCCAGAATGTCTGTCAACGTCAACCGCAGCGTCACGGACCAGTTTTATCGGTACAAGATGCCTCGTTTGATTGCTAAGGTGGAAGGCAAGGGAAATGGTATCAAGACTGTTATAGTCAACATGGTTGATGTTGCCAAGGCACTGAACAGGCCTCCTACTTATCCAACCAAGTTCTTCGGCTGTGAGCTGGGAGCCCAAACCCAGTTTGATACAAAGAACGACCGCTACATTGTCAACGGGTCTCATGAGGCAAACAAACTGCAAGACATGCTGGATGGATTCATTCGCAAGTTTGTGCTGTGTCCAGAGTGTGACAATCCTGAGACCGATTTGCACATCAACGCCAAGAAGCAGACCATAGGAAACTCCTGCAAGGCCTGTGGATACCGAGGCATGCTGGACACCAGACACAAACTCTGTACCTTCATTCTCAAAAATCCACCTGAGAATGAGAGTGGATATGtcaagaaggaaaaagagaagaagaaccgcaaaaaagacaaagagaatgGCTCAAGCAGTGGGGAGGCTGGAAACCGTAAGGACATAGATGCCCCTGATGCTGTGGacggagatgatgatgatgaagattggGCTGAAGAGACCACGGAGGAGGCGCAGCGTCGCCGGATGGAGGAGATCAGTGAGCATGCTAAGGGCCTCACGCTGAGCGATGATCTGGAGAGAAGCCTGGAGGAAAGGGTCAACCTGTTCTACAATTTTGTGAAGCAAAAGAAGGAGCAGGGAGTGATTGACTCGGCTGATAAAGAAATCCTGGCTGAAGCGGAGCGGCTTGAGGTGAGGGCCATGGGCCCGCTGATTCTGAGTGAGCTGCTTTTTGACGAGAACATCCGTGAGCAGATTAAGAAATATAAGCGCCACTTCCTTCGATTTTGCCACAATGATAAAAAGACTCAGAAGTACCTCCTGGGTGGCATTGAGTGTCTGGTGAAGCTCCATCAGAGTCAGCTGCTGCCTCGCGTCCCCATTATTCTCAAAGACCTGTATGACGCTGACCTGCTGGAAGAAGACGTCATACTCGCATGGGCCGAGAAGGTCTCCAAAAAGTATGTGTCTAAAGAACTCGCTAAGGAGATCCATGCCAAGGCTGAGCCCTTTGTGAAATGGCTGAAGGAAGCAGAGGAGGAGAGCGAGGGCAGTGATGAGGAGGACGAGGAAGATGGAGACAATGTGGAGGTGGTGTATTCCTCCTCTGCACGTGAGCTGAAGATGGAAACCACAAAGCCAGAAAAGGCTgataaggaggaggaggatatTGATATCGatgccatttaaaaaatttaacgAAGTAATGAAGCTGCCTCTTGATACTTTGCAATGCTGCTCCTTGTTAAACTGTTTCTGCTCTTCAGCTGTAGGCCTGCGTCAGTGCTCTGCTAGAAAGCCTTATTTTAGTCACTATTTGAAATCGTTGCCATTGTATTTATATGCATGAAATTCTTTGGATTATAGGGTGCTTGTCATGCCCCTCCCCT

Function

symbol description
eif5 Predicted to enable GDP-dissociation inhibitor activity; eukaryotic initiation factor eIF2 binding activity; and translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex and formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human EIF5 (eukaryotic translation initiation factor 5).

NR:

description
eukaryotic translation initiation factor 5

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03262 EIF5; translation initiation factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944472.2 True 2039 mRNA 0.49 12 6884303 6893353

Neighbor

gene id symbol gene type direction distance location
LOC113545215 NA coding upstream 16272 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 35770 6833386 ~ 6848533 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 76962 6797339 ~ 6807341 (+)
LOC113545329 LOC108257524 coding upstream 184486 6691634 ~ 6699817 (+)
taf4b LOC108258144 coding upstream 207949 6661880 ~ 6676354 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding downstream 12168 6905521 ~ 6911188 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 93756 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 130654 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 160605 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 202788 7096141 ~ 7106016 (+)
G291037 NA non-coding upstream 49605 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 156789 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 461337 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 541763 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 646387 6237714 ~ 6237916 (+)
LOC117599731 NA non-coding downstream 37016 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 45838 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 88610 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 165030 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 326953 7220306 ~ 7227227 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 724263 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1082610 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1904903 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2274702 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2546004 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 119389 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 884244 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1150033 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1595294 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2100160 8993513 ~ 8996996 (+)

Expression


Co-expression Network