rtn1b (rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379)


Basic Information

Item Value
gene id rtn1b
gene name rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7724306 ~ 7767694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944474.2
ACCGCTGAACCGAACGAGCCATTTTCGCAGGCGCGTGAGGAAGAGCTCAGCCCGACAACACGCGCGCGCTGCTTTGTCATtttgtcctctgtgtgtttacCGTCTGCTCGTATCATTTAATTCAacgaagaaaagaaaaaaagagtcgGTGTGTCTGAGGCGCATCGCGCAGGCATGTCGGTGAAGCCGAGCGGAGAGTCAGGATCAGAGGGCGGCTGGTGCGGAGCCGatgtggagaacatggagcTGTTCGGGAAGAAGAGCAGCTCGGCCCGCTTTGACGACTCGGAGCGCGAGGACGAGCACAAGCAGCACTCCCACCATCCGCCTCACCCCGTTACCATGGAAACTGCATCTACAGATAAATCAGATGCAGATCTCCTGAAGAAGTCCATCATTGATATGGGTGACCCTTACACATCCCTCCTGTCTGGCTACTCCTCTCAGATGGACACCTCCTACTTCTCGGGTGATGTCAGTGGAGGGGAGCAGAAGCAGCAGGCAGGAATTGATGACCTCATCTCAGGCCTGGATTGCCAGTCTGCCATGTTCAGCTCAGACTCAGGTATCGAGATGACCCCGAGTGCTGAGCTTGGCTACAGCTCCCACAAGCTGCGTGACTCAGACAAGACCCCCGATTCCACCTACAACTACATGGATATCAGAAGCAGAGAGGATCCCCACAGCCAGCCGCAGTCCTTGGAGGATTGGGGGATCAGTGCCGCTTCAGAATCTGCTCCTCTATCCAGCCTGAGGGGAGGGCATTACTTGGAGAAGAGTCCTTCACCTGTGGAAGTGGAGACACTGGGCCCCTCTGCAGCTGCGCTTGACTCACACACTTTCCCCTATGTAGAAGAACCATCAGATGATGAGCTCTCTGACTACCAGCCTGACCGCTCACCAGTTGCTGAGGGCAGTGCCAGTCCAGTCAAGATCACCTTGACAGAGACGCCACCCTTGTCAGTCTCTCCTGTGGCCATCCAGCGTGCCTCTCCTGTCCCTGTTTCTGAGaaagagagcatcctgagcctGGGGCTGCAGGGCGTGCCCACTGTCACACTGTCTGAGCCAGAGGATGAGAGTCCAGGATCTTCCACTCCACCACTGACAGAAGAGTCTGACTCTCCATCCGATCCCATGATCCAGGCCACTGATGTGAAAACCCAGGAGAAAGCTCCAGAAACTTCCTTAATGTTCTCTCAGACTGCGCCCAAATCTCAGAGTCCTTCCTTGGAGCTTAAGAGCACCCCCACTCTTCCCCTGTATGCCAAGGTTACAGATGCCAGCAGTGGAGACTCAGGTGATTCAGAGATTGAGCTTGTGTCTGAGGAGCCAAGCCCACAGGCCCCCAGCTCTGCCTACATGACCTTCAGCAAGAGCCCCAGCACCCCTCCACCAGCTCCTGCCACAACTCAAGctcctgtttctgtctctgtccctgccTTTAACCCTCCCCCTGGCCTTGCTTCTGCCCCCATTTCTGCAGCCATGCAGTACAGCATTCTGCGTGAGGAGCGAGAGGCTGAGCTTGATAGTGAGTTGGCCCTGGAGTCCTGTGAAGAAGAGAGCCCTAAGAGATTTCCCCAGGACTCATCCATCAAGGTAAGCAAAGTCAACTTGCAACCGGCTGAACCTCCGTCCACCTCAGCTACAGTGACCACTGCTCCCCCTGTGAGCCCTGCACCTCCACCTGCTGCTCCAGTCTCTGTTGATGCTCCTAAAGAGAAGGTGGCAAGTGAGGGAGAGGACGAGAAGACAAAGCCCAGCAGTAAACCTTCACCCCCCAGTGCAGTCCTGCCTGAACTGAAGGTGGAGCAGCCTCCTGAAGAAAGACAAGCAGAGAGGAAACATTCTAGCGCCGAAAGACACCCCACAACTCCTGCTATCTTCCAGGGAATAACTAGAGAGAAGGCGATGGAGCTGTTGTACTGGCGTGATGTGAAGCAGACTGGCCTGGTGTTTAgcagtgtgctgctgctgctcttctCTCTGACTCAGTTCAGCGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCCGCTCTCTCCGCCACCATCAGTTTCAGAGTCTACAAGTCCGTCCTCCAGGCAGTGCAGAAAACCGATGAGGGACACCCCTTTAAGTCATATCTGGAGATGGAGATGTCCCTGTCACATGATCAGATGCAGAGGTATGCCGAGAACACCCAGCACTACATTAACAACACTCTGAAGGAACTGCGCAGGCTCTTCCTAGTGCAGGACCTGGTGGATTCACTAaagTTCGCAGTGGTCATGTGGCTGCTGACCTACGTGGGAGCGCTCTTCAATGGCCTCACTCTCCTCATCATGGCTGTGGTGTCCATGTTTTCCATGCCTGTGGTGTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGACTCGTAAGGACTCAAGTAAACACGGTGGTGGGGAAGATCCAGGAGAAGATTCCAGGAGCAAAGCGAAAGGCTGAGTAAACAACCCAGCGCCACTGGAGAATACAAGGAGACCATGACCAGGCTTTCCCTTATTATAGGGAGAGCTTCTCAATAGGTCATGggtttcctctcacacacacgcacacacacattaagaaacacatatacacacatacatacatgtacagatacacatgcacattatGTACAAGTTACTGGAGCATAGTTCTACTTTGTGCACACTGTGGTGTTTAGAGCAGCAGCCGAGCCGTTCAGAGAAGTCCCACCCTTGCCCAATAAccatagaggaaaaaaaaaaaaagacaaaaacgtGCCGTCACTCAAGCACTAAGCTCTAgtaaatttaaaacaatgacaTATAAAAGAgttgtaacaaaaacaaaaccaaaaaaatctgtgttttcGTGTTGCTTATTAAGTGCATGAAGTCAAGAGTCTTAAGTGCTGATGcgtttcttcttttcttctggtTTCCTGTGCTCTGGGCTTTCTCAGCTGCGCTGAAGACGTttctctgtagtgtgtgaacgATGTCTTCAGCTTTAGTGCTCTCCTGTGATagtctcttcttcttcttcttcttcttctttggggTAAAAAGTCCAAAAGCAGCTTTTTTGTCTGTGGCACTGGGTGGGTCTTCTCTCTTCTCATTATACCTGGAAACATATACACTTAAATATTACTATCAGCTAGACGCGTGGACATGCCAAGGTTTACCTTCTGTGTGTGGCAAAAAAGACAATATTTAGCAGTGTTCTGATTAGGTATGGTAAACTAacttgtagtgtttttttttaatataatttgttaCAGGAACTACAGAGATTCATGTTTTTAGGTACTGTTGTCAAACTTCTTTTAAGTGAACtgcaaatgaatgaaagagacGGAGGAGGAGGAAGCTTAAAGCAAGAGAATGCCAGCTTGGTGATTGTGTCCATCCTTGTACTATGTTGAGTGTAGTTCTTCTTAGCCATGGACTCTTAACTATTTGCACTTAAAATGTACTCACTGCTGAATGCgaaaataaatgttcttaaatgta
>XM_026944475.2
ggggaaagtgagagagagagagagctagagaaagagaagagagagagagagctgtgcaGCAGAGCAGGAGCAGAGGCACAGCAGCTTAGCGTGTTAGCAGTAGCCGAGCGTCACTCCTTCCCCTCAGCATGCAGAGCAGCACCACGGCAGCCGCAGACTCCACCAAGATGGAGGGATTCTGGAGCAACTGGAAGTGCCAGGCGATGGAGCTGTTGTACTGGCGTGATGTGAAGCAGACTGGCCTGGTGTTTAgcagtgtgctgctgctgctcttctCTCTGACTCAGTTCAGCGTGGTCAGTGTGGTGGCCTACCTGGCCCTGGCCGCTCTCTCCGCCACCATCAGTTTCAGAGTCTACAAGTCCGTCCTCCAGGCAGTGCAGAAAACCGATGAGGGACACCCCTTTAAGTCATATCTGGAGATGGAGATGTCCCTGTCACATGATCAGATGCAGAGGTATGCCGAGAACACCCAGCACTACATTAACAACACTCTGAAGGAACTGCGCAGGCTCTTCCTAGTGCAGGACCTGGTGGATTCACTAaagTTCGCAGTGGTCATGTGGCTGCTGACCTACGTGGGAGCGCTCTTCAATGGCCTCACTCTCCTCATCATGGCTGTGGTGTCCATGTTTTCCATGCCTGTGGTGTATGAGAAATACCAGGCACAGATTGACCAGTATTTGGGACTCGTAAGGACTCAAGTAAACACGGTGGTGGGGAAGATCCAGGAGAAGATTCCAGGAGCAAAGCGAAAGGCTGAGTAAACAACCCAGCGCCACTGGAGAATACAAGGAGACCATGACC

Function

symbol description
rtn1b Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; gill; heart; and muscle. Orthologous to human RTN1 (reticulon 1).

NR:

description
PREDICTED: reticulon-1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944474.2 True 3508 mRNA 0.50 9 7724306 7767694
XM_026944475.2 False 807 mRNA 0.54 7 7756896 7766704

Neighbor

gene id symbol gene type direction distance location
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding upstream 85202 7636185 ~ 7639104 (+)
six4b LOC108258176,LOC108434989 coding upstream 94384 7623221 ~ 7629922 (+)
trnac-gca_25 NA coding upstream 134867 7589368 ~ 7589439 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding upstream 221868 7478282 ~ 7502438 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 367392 7348155 ~ 7356914 (+)
rd3l LOC108257848 coding downstream 6798 7774492 ~ 7776361 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 17728 7785422 ~ 7832026 (+)
trnaa-cgc_5 NA coding downstream 115524 7883218 ~ 7883289 (+)
trnaa-cgc_6 NA coding downstream 116951 7884645 ~ 7884716 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding downstream 118099 7885793 ~ 7945812 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 56501 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 58297 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 109326 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 202183 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 203448 7489308 ~ 7520858 (+)
G291644 NA non-coding downstream 65636 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 178258 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 358327 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 541548 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 697143 8464837 ~ 8465037 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 704620 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1564266 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1922613 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2744906 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3114705 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 9903 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 275692 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 720953 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1225819 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1306334 9074028 ~ 9179173 (+)

Expression


Co-expression Network