clic5b (clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823)


Basic Information

Item Value
gene id clic5b
gene name clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8446316 ~ 8459728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944480.2
GCTGCCCATGCGCTCCACTGCACTCCTGTCCTCTCCCCTCAGCAGCAGGTGCACGTTTCAGACGCTTCAGCCCAACTTCTCAGACTTCAAAAATGGCAGAGGAGAACATATATGAGAAAATAGACGATGAGAACTTGTATGAAAAGCCTTTTGATGAGCCAGACTTCTCTGCTAAGGAGGAACCAAAGTATGAGAACCAAAGCACGTTTGCCTACGACACCCCAGTGACAGACGCGATTTACAGCGAGATTGATGTTCACAGTAAGGCAGAAAGAAGTTTGTCTCCAGACTACATAAACAGTAATGAAGTAACAGAGGAGGCAGAGGAAATCCCGACTGAAGCCCAGAACGGTGTAGGTTTGTATGAGGTTCCAGCAGGGGAGAATGAAGAAGAAATGTCGTCCAGACGCTCATCCGCATCGTCCGCTGAGCACTTCAGAGAGCCATATGATGAAGAGCAGCTACAGGAGGCCACTTATGAAGACAACGCAGAGGATGGGATGATGATGGCTTACTCACTGCCAAAGGGCAGAGCCGCAGGACCGGAGGAAGAAGTGGTGGACTACAGTCTCAAACCTGTGCAAAACAACAACgttgaagaagaagagaaacctGTAGATCCCAGTCAGCCTGAAATTGCACTCTTTGTCAAGGCTGGGAGTGATGGGGAGAGCATTGGGAATTGTCCATTTTCTCAACGCCTCTTCATGATCCTCTGGCTCAAAGGGGTTGTCTTCAACGTCACCACTGTGGACCTGAAGAGGAAACCAGCTGACCTGCATAATCTGGCTCCAGGCACACACCCTCCTTTTCTCACCTACAATGGTGAGGTCAAGACAGACATCAACAAAATTGAGGAGTTTTTAGAAGAAGTGTTAGCACCACCAAAATACCCCAAGCTGGCAGCCAAGCACAGGGAGTCCAACACAGCGGGGATTGACATATTTGCAAAGTTCTCAGCTTACATCAAAAACTCAAGGCCAGAAGCCAATGGAGGGCTGGAGAAAAACTTGTCAAAGGCCATAAAGAAGCTGGATGACTACCTGAACAGCGCTCTGCCTGAGGAGATAGACGCAGACAGCGTGGAGGACGAGAAAAGCTCTACCCGCAAGTTCCTGGATGGCAATGAACTCACCCTGGCAGACTGCAACCTCCTGCCAAAACTCCACATAGTCAAGATTGTTGCCAAGAAGTATCGTAACTATGACATTCCTGCTGAAATGACAGGAGTGTGGCGCTACCTGAACAGCGCCTATGTTCGAGATGAGTTCATCAACACCTGTCCTGCAGAAAAAGAGATTGAACTGGCCTACCAGGATGTAGCCAAATGGCTGGTCAAATAAAGCTTGTGGCACAAATATCAGACCAATTAGACTTTATAGGTGCAGGCAGAAATAGACTGCACTGGTTTTATAGAATTTAGTTTTGTATCATTGAAAACAGATCTTGCAGTGAAACCACTCTGGTTAGCCAGAATTCTGTTCTGcaacacaaaataaagaaatatgatGACTCAGTGCAGGCCAGGGAAGTCTCATTCCCCTGTAGTGATTGTGTCTAAACTATCTGTCAAGGCTAGATAAATAGTTTTCCAcgagttttcttttttcagctaTTTGCTGCAATTCTATTATTTACATCAGTAGATTAGTATTATTTAAAGAAGATATTATCTGTCAATAACAAGCATATACATTAAAGTTGACAGCTAAATATAGAAAGGATCTATTAATTAGTAGATTCAAGTTTCTAATTTGATGATGATTTTCAGGACTCAGGATTGTcttaacatataaaaatatttaataggaATACTAGTGTGTCTGAATGATTATTtagaaaaagaacaaatgagCAATGGGACAAGATAAAAGTGAAACAACTTTTAATGCAAGATCtgaaaatcatatatatatatatattttttacttttattgttttaattacaactctaaaatattttcataatgcCTCTAAATCAATTAATTAAGATATGTGCATACATACATTCCCAGCTCAGATATTAAACTCTTTCATTTAAagtatatatttcattttgattCAACAGACATCCTCTCATTTTCCTACAACTTCTTTGGTGAAgtacattttattgtgttaaCATTTTACTTATCTTTTTGTCAGCTGATATATGTTTCCGAAAGATTTAGTCTTGTCCTAAATTATATCtgattaatttgtaatttgtattttgagTTGTGTGGCAAAGAAGATTCATGACATCTCATAATGCAGTTAAATCAAGTAAAGCAGTGTAGTCGGGCTCTTCTCCAGGTCTCCTCCACTCTCTGCTGAAATAGCACACAGCTCCACAGACTTCATAGGTCCTCATGGAGCTCGCTGCTCTTGTGTGGCTTGGACAAACATTTGATATGAAAGGGGAGTGTGGCGCCAGAGAGGCCTATCCTGCATGAACCTCTacgaataaaataatatttttacagtt

Function

symbol description
clic5 Predicted to enable chloride channel activity and voltage-gated ion channel activity. Involved in chloride transport and sensory perception of sound. Located in Golgi apparatus and actin cytoskeleton. Implicated in autosomal recessive nonsyndromic deafness 103.

NR:

description
PREDICTED: chloride intracellular channel protein 5-like isoform X1

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006821 chloride transport biological_process

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944480.2 True 2467 mRNA 0.41 6 8446316 8459728

Neighbor

gene id symbol gene type direction distance location
LOC113545195 l3hypdh,LOC107684001 coding upstream 140717 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 255735 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 320653 8088687 ~ 8125663 (+)
trnaa-cgc_7 NA coding upstream 557480 7888765 ~ 7888836 (+)
trnaa-ugc_18 NA coding upstream 558236 7888009 ~ 7888080 (+)
LOC113545337 LOC108257647 coding downstream 90214 8549942 ~ 8557745 (+)
wdcp wdcp coding downstream 140683 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 176722 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 431940 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 480664 8940392 ~ 8947001 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 124857 8309242 ~ 8321459 (+)
G291769 NA non-coding upstream 318418 8126021 ~ 8127898 (+)
LOC117599748 NA non-coding upstream 498285 7945952 ~ 7948031 (+)
G291644 NA non-coding upstream 609236 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 778511 7666919 ~ 7667805 (+)
G291972 NA non-coding downstream 5109 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 11219 8470947 ~ 8473728 (+)
G291996 NA non-coding downstream 50841 8510569 ~ 8510776 (+)
G292072 NA non-coding downstream 123222 8582950 ~ 8583477 (+)
G292074 NA non-coding downstream 124491 8584219 ~ 8585902 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 371872 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 664308 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1426630 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2286276 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2644623 5735473 ~ 5801693 (+)
LOC113545369 NA other downstream 28919 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 533785 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 614300 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1444022 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1699227 10158955 ~ 10170739 (+)

Expression


Co-expression Network