gzf1 (gzf1)


Basic Information

Item Value
gene id gzf1
gene name gzf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8940392 ~ 8947001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944503.2
AAAACTACAATTCCCGTGTTCCGTTTCCAACATGGCGGACTGAGAGCTGGGTGCGATTTCTACAGGAAATACTTTCTCATACggctgtgtgtttgtaaagGGCTGCCATTTTACCGAGCTTACGGAAAGGACACCTGAGGAGAATGAAAGATCAAAAGGTTCAGCTCATATCCAGCTCATACCATGAGCATTTACTTGGGGCAATGTGGAAGTTAAGAGTCACAGGAAACCTGTGTGATATCACAGTGCAAGTGGATTTTCAAGGGGAACTGGAAGAATTTACGGCCCACCAAATAGTACTTGCTGCATCTAGTGGCTATTTTAAAACCCTCCTCTTAGCAGAGGAGCGAGTTGAAAAATTATTCTTAAATACCATTTCACCTGAAGTCTTTACCAAATTCTTAGAGTATGTGTATTCTGGAAAAATGGAAGTTGAGGAAAGCTGTCTTGACCACATAATAAACATGGCAAAGCTGCTCGACTGCCAAGACCTAGTGGATGCTTGCAGTACCAAACTTCTGGCTCATAATTCTGAAAGAGCCAGTGCCAGCAAAGGCAAATTACTGAAGGAGAGGTCCAAAAAGGCTGTAAAGAGAGCACTagataaaaggaaaaaactcaaaattacactgaaaaCCATAAGCACTGAGAGGGGGGAGAAAATAGTGCTACAGGGCAGGAGGAGCAGCAGGTTAGCCGGCCGCAGAGTTGTTGTAGACTTCAATAAGAAGAAGCCATACCACAAAGCAGTATTTCCACCTGAGGCTTCTGACGGCTTTGTAAATCGAGACAAATCAGAGGCAACACAAGAGGCATCGCTAGAGGTTGGAGAAACAGAATCGGCTGTTCCTACTGATCCAGTTGTACCCCAGAAAGAGGCTCTCACTGACAGTGGCTCTGACTCACCATGCACTTTCAACCGTGACATGTCAGAAGAAGAGTTTCAAGAATCTGACTTCATACCAACTGCTGCCATCGAGAAAACGGATGCAGCTGAAAAGGATTGCAAGCCAGTTGGCTCTAAGTATAATTGTGACATGTGTATCCGTTCATTTCGCTACGAGAAGAGCTACTTAAAGCATGTTACGGTTAGTCATGGGATCCACACTGATACGACTTACCGCTGCGGCATCTGCCAGCAGACCTTCGCCAACCGCTGCAACCTGAAGATTCATGAGCGACACGTGCACAACGACGAGAGGCTCTTTCTTTGTGGAATGTGTGGTAAGGCCTTCAAACGCAAGAAGGATGTGACAAGGCACATGAGGCAGGTGCATGAGGGTGGAACCGAGCGACACTACTGTCCGATCTGTGGCAAATCTCTGAGTTCAAGAACAGCTCTCACCCTGCATGAGAGGACACACACGGGGGACAAGCCATACAGCTGTGATGAGTGTGGAGCTCGGTTCTCTCAGAGCTCAGCACTCAAGACACACCAGAGGATTCACACTGGGGAGAAGCCTTTTGCCTGTGACCTGTGTGACGCCAGGTTTACCCAGAACCACATGCTGGCTTACCATAAGCGATCCCACACAGGGGAAAAGCCCTATATGTGTGAAAACTGTGGGAAAAGCTTTGCCTCTAAAGAATACCTGAAACATCATGCAAGAATCCATTCAGGCTTGAAGCCATACAAGTGTGAAAACTGTGGAAGAGCATTTGCACAGCGTAACTCACTCCATCAGCATATGAAAATTCACACAGGTGAGAGGCCTTACCATTGTAAAGACTGTGATAAGCAGTTCACTCAGCTCAACGCTCTTCAGAGGCATCAGAGGATCCACACGGGAGAGAAACCTTACATGTGCAGCATGTGTGGCCGAACGTTTACGGACAAATCTACCGTCCGCCGACACACTTTGACCCACGACAAAGATACACCTTGGAAGAATTACCTTGTTGTGCTAGAGGGTAATGTAGAGGAACGTGTTAAGAAGCCCAAAGGTTCATCTGTAAGGAAGGACAAGGCAGCAGTGAATGCAGATGAACATCAGGCAGTGGAGGATCAGAATGACACTAAAACCCAGGAGACAGTGTCTGTGCCAGAGGAGCCAGTGACCATCTCTGGAGACTGGGCTGACCCTGGCACCATCACTGTGGTCAGTCATGGAGCCCTGGGCAATCTGACCGTTATCCAGACAGAGGTACCACCTGGTACACAACTGCAGCCCATCGTCACTGCAGACGGAGCCAGTGTCCTTTCACTGGAGAGTTCCGCTGTCGGCATCCCTGTTACTCTGCCCTTCTCCATTCCTATCTCTGTTGCACATTCCATCTCTGGCTCAGCCTCGCTGACTGGCACAGTCACTCTGAGTGAACCAGCCACTGTTTCTGATGCCATCTTGGCTCCGGCGACTTCAGCAGCACCTGTAGCCACAGTCACAGAAGGCATTCTCTCTCCAGTTGAAGTCACTTTGTCTACATCTAGTGAATGTGTAACAGCACAGTCAGCGGTGGAGCAGGCTGAGGAGGCACAGCAGTCAGATTTACAGGAGGGAACAACTGAGCATGTACAGAACACAGAAACAGTAGAGGCCATGGAGATCTCTGCAGGAGAGTAGTTTTAAAGGCTTTTTAGTGGGTCTTATCTGTACACTGTATTAATTAAGTCTTTAATGGGcctatttaatgtaaatattgtaatgCTTGTTGTATAGCATATTATAAATGATATTCCTCAGAAGAAAAATTCCTTTTCCCTTAACAGGACAATCGAGCTGTTTCAATGGCTGATCAGTTCTTATTCCATAGAACCATTTAAATTGCACAGTGAGAACAAGGATATCAAAACCAAGCCCTGAAATAATTGTTTGAGCTTTGGCTTGTGTGGCGTAAAGAGCTTGTTCTTGCAGAAGTTTACTGGAGGAGACACTACCAGCAGGTTTTTCAAATAATGTTTTGGGACAGTATTTCCTTATTTTTCATGTGGCAGTCAAACATGTTGTATATCCATTGCACTAATAGATCAATCAGTTGGAAATTAATGACATTCGGTAACCTTTGTCTAGTGTTTTCTATATTTCACGTGGCCCCAATGTTTCACACAGTACAAAGCTTTAACAAACTTCTGGCAGGTCACATTTGTGTATAATATCGatcttttatttctgtacattAATAGACCCATTCAGCAAGTGAAGACATCAGCAACTCTGTCAGAAAGAACCCAGATAAGCATATAGGTTGCTTCTTctgatggctttttttttttgaaaattgtaCACATATTTGAGATACTTAACATCAACAACACTAATACACAGTGACATGCGCTGCTAAATACCTTCAGTATGGAGAGTGCACTAGCTGAAGTGCTGTATGAACTATGGTTTCACAACACGACACAGAGCGGCACTGTCAGGCTACTGGGATTTCAAACTTTTCATAGTTTGAATATgctaacaaacaaaaagcaaaaactttATGGTTGGAGCAGAATACCCAACCCCTTACTGCAAATAGAGATGACAGTTtgaaagaagttaaaaaaaaaaaaaaaaaaaaa

Function

symbol description
gzf1 Orthologous to human GZF1 (GDNF inducible zinc finger protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K22402 GZF1; GDNF-inducible zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944503.2 True 3505 mRNA 0.45 6 8940392 8947001

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_18 NA coding upstream 48652 8891668 ~ 8891740 (+)
atad2b atad2b,LOC107603081 coding upstream 235407 8636450 ~ 8704985 (+)
wdcp wdcp coding upstream 334409 8600411 ~ 8605983 (+)
LOC113545337 LOC108257647 coding upstream 382647 8549942 ~ 8557745 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 480664 8446316 ~ 8459728 (+)
chgb LOC108258019 coding downstream 40231 8987232 ~ 8990529 (+)
bmp2b LOC108258023 coding downstream 90110 9037111 ~ 9041907 (+)
LOC113545235 plcb4,LOC108258041 coding downstream 236431 9183432 ~ 9255249 (+)
lamp5 lamp5,LOC107704368 coding downstream 311393 9258394 ~ 9264851 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding downstream 389791 9336792 ~ 9338360 (+)
G292102 NA non-coding upstream 235148 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 354490 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 356915 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 429616 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 466664 8470947 ~ 8473728 (+)
G292654 NA non-coding downstream 461491 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 467550 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 607436 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 640699 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 664987 9611988 ~ 9612612 (+)
LOC113545369 NA other upstream 405892 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 865948 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1158384 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1920706 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2780352 6135920 ~ 6160040 (+)
G292216 trmt6 other downstream 46512 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 127027 9074028 ~ 9179173 (+)
G293016 ileu other downstream 956749 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1211954 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1734309 10681310 ~ 10682664 (+)

Expression


Co-expression Network