brf1b (brf1,brf1b,LOC107683968,LOC107718407,LOC107701485)


Basic Information

Item Value
gene id brf1b
gene name brf1,brf1b,LOC107683968,LOC107718407,LOC107701485
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7885793 ~ 7945812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944507.2
GAGCAGTTGAGAGTCAAAACAAGCTACTGAgagtaaaacaaaatgtttcagcAATACTGAGTTATTTTGTTCTCAGTTTGTGCAGCATGGAATAGCATTGCGGATAACTTGCTTATCAATAAAGTCTCTCGAAGACACTGCTTTGTAGCGTTTACTTCTGTGCTTGGTGTACCAGCATCTCCTCGGAGTCAGGATGAGTGCTAGGCAGTGTAAGAACTGTGGTGGAGCGGATATTGATATAGACCAGGCGCGTGGAAGTGCTGTGTGCACCGCCTGCGGCTCTGTGCTTGAGGACAACATCATCGTGTCTGAGGTGCAGTTTGTGGAGAACAGTGGAGGAGGCGCGTCTGCTATCGGACAGTTTGTGTCTGCTGATGGTCCTGCAAAGGCCCCAGTGCTTGGAAGCGGCTTCCACACAAGTCTTGGGAAGGAGTCACGTGCTCAGACACTTCAGAATGGGAAACGGCAAATACACAGCCTGGGCAGCCAGCTGCAGCTGAACCAGCACTGCCTAGACACAGCCTTCAACTTCTTTAAGATGGTGGTGAGCAAGCATTTGACAAGAGGGCGCAAGATGGCCCACGTCATAGCTGCCTGCCTCTATCTGGTGTGCCGGACAGAGGGCACTCCCCACATGCTCCTGGACCTGAGCGATCTCTTACAGGTGAACGTGTATATCCTGGGAAAGACTTTTCTGCTGTTGGCCAGAGAACTCTGCATTAACGCGCCTGCTGTCGATCCATGTCTGTATATTCCACGCTTTGCACACATGTTGGAATTTGGAGAAAAAACCCATGAAGTGTCCATGACTGCTCTGAGACTGCTGCAGAGGATGAAGAGAGACTGGATGCACACAGGACGCAGACCATCTGGACTCTGTGGCGCAGCTCTGTTGGTGGCGGCCCGCATGCATGAATTCCGCCGCACGGTGAAGGAGGTCATTGGTGTGGTGAAAGTATGTGAGGCGACTCTCAGAAAGAGGCTGACAGAATTCGAAGACACACCCACCAGTCACTTGACGATTGATGAGTTCATGCGAGTGGACCTGGAGGAGGAGTGTGATCCCCCTTCTTTCGTTGCTGGTCAAAAGAAGTTAAAGATCCAGCAGctGGAACAGGAGCTGGCCAGGAAGCTTGATGAATATCAAGGTGAGATCAGCTCCTATCAGGATGAGATTGAGACAGAACTGGAGAACAGCAGGCCTAAATTGAGAGGAATTTATGCCATGTATGCAAGAGAAGaCACCAATGATGGCAGTCTGTCTCTGGTGTCGGACCTCGCGGGAGATGAAGACATGGAAGATGAGGAGATGGAGGCTGCAGCTCAGCACCTCAGTGAGGACTTCATCAACCAAGTGTTACCTGAACTGGAGCAGGGACCTCAGGGGGGCACAGAGGCACAGGAGCAGGGCAAAGAGGTAGCAGAGCTACCTAGTGGCTCCACCCATGTGCCACTGACTTCACTGCTTGGCCCGCTTCCCAGCGCTGCCAGCCTTGGCCTCACAGACTCTATCCGCCATTGCATGACTGAGGAGGAGGCGGATGAGGACAAGTCAGATAATGGCGAACTTGATCTGGAAGGCATCGACGAGGATGAGATCGAAAAGTACATTCTCAATGAGAAGGAGGTGCAGGCTAAGACAGAGCTGTGGATGAAGCAAAATGAGGAGTATCTAAGGGAGCAGAAAGaaaaagaagagaggatAGCTAAGGAGAAAGAGCAAGGGATCTATAAGGAGAAGcccaaaaaaacatccaaaaggCGAGAGCCCATTCGGGCCAGCACTGCAGGAGAGGCAATAGAGAAGATGCTGGAACAGAAGAAGATTTCAAGCAAAATTAATTATGATGTACTGCGAGACCTGAACAGCAAAGGCAGCAGCAGCCCTGCACATAAGACAGAGGAAGAGTCTGGTATTGTCCCTGGACGTAAGAAGCTCACCCGCCGCAAGAAACAGCCCAACAAGAGCAATCTGGGTCTGGCCAAGCCTGCAAGCCTCATGGGGAAAAGGCTCCGCCCCCTTATATCTTCAAATCCCAAGAAGAAAAGAGCAGCTACACAGATTGTGCCCAGTGCTGTGATGCTGCCGCCAGTGACCCCTGAGACTCCGCCAGCCCCTACTCCTCCTCCAGTCATAGAGAGTGGCCCTGTGACATATGAGGAGCCCactgaggaagaagaggacGAAGAAGTGGAAGAGCCCTGTGTCAGTGCTATGAAGCTTATGGGAGGAAACGAATATGGCTGTGAAGCCGAAGAGGAGGAAGTTTTTTAATGCACAGTGTTTGTCTTCCCGAAAACAAGCTATGATTTCGTCAGCATCTGAGCGATGTCTTCTCCCCATgtagagacaggagagagagaaaaacagggcTTGGGCATGTGTGCTATTGTCATTACCATGAAGGAACATCTATGTGTCAGTGAACTTGTTCAACTCCTGCAGCATCTGAGACAGTAGAGGGACATCTGAGGGTGTTTGTGCGACATGTGGGAAACACATGACTGAAGACAAGAACTGTAGATACTTGAACTATTAGACACATGCTAATCCACCAGATGTGCATTGCTGTAATTACGTATAGGAAAACTGCTAAACAAACCATACATGTGCTAAGAGGAAACCTAATAAGTTGTTGAACATCTAATTATGTTGTGATGCAGCTTTAGAATCCGCCGATGTAGCATTCATTTAGGAATTAAGCCCACTCAGGTGATGTTTGTATGATCAGTGACAGATTTCATCCTCATTTTATTCACACTTCTGTGTAATATAATAgttgtttctgatgtttctAGGTTGACagcaattgttttaaaaatgcttgAAGGTGCTCTGATAATAGATGTcatattttgaagaaaaaaattttatgttatgtaatggatttatttttgtgtcGTTTTAGTCTTGTCAGAGTTTTAGCTTTGTTAAACTCTATAATATTGGCCCTCATGTTAGCATATGAGTGCACATATGTAtaaatttgtataaatgtaCATAATACCTATTGAAGTTTTGTCACTTGCTTCGTTTCGATGAAAATGCAATGTTTccgttttaatttttaattacatatgtTGATGTAATGTATTATGCATCACTGTTTGTTACTGTGATATTctcctgttgttgttttttctgctgGCTACCTTGAAACCCTTTAGGTCTCTATTAAATTTCATAAGAAACA
>XM_026944508.2
GAGCAGTTGAGAGTCAAAACAAGCTACTGAgagtaaaacaaaatgtttcagcAATACTGAGTTATTTTGTTCTCAGTTTGTGCAGCATGGAATAGCATTGCGGATAACTTGCTTATCAATAAAGTCTCTCGAAGACACTGCTTTGTAGCGTTTACTTCTGTGCTTGGACAGCCCACAGCCACTGTGTGTATCTACTTAGATAGTGTACCAGCATCTCCTCGGAGTCAGGATGAGTGCTAGGCAGTGTAAGAACTGTGGTGGAGCGGATATTGATATAGACCAGGCGCGTGGAAGTGCTGTGTGCACCGCCTGCGGCTCTGTGCTTGAGGACAACATCATCGTGTCTGAGGTGCAGTTTGTGGAGAACAGTGGAGGAGGCGCGTCTGCTATCGGACAGTTTGTGTCTGCTGATGGTCCTGCAAAGGCCCCAGTGCTTGGAAGCGGCTTCCACACAAGTCTTGGGAAGGAGTCACGTGCTCAGACACTTCAGAATGGGAAACGGCAAATACACAGCCTGGGCAGCCAGCTGCAGCTGAACCAGCACTGCCTAGACACAGCCTTCAACTTCTTTAAGATGGTGGTGAGCAAGCATTTGACAAGAGGGCGCAAGATGGCCCACGTCATAGCTGCCTGCCTCTATCTGGTGTGCCGGACAGAGGGCACTCCCCACATGCTCCTGGACCTGAGCGATCTCTTACAGGTGAACGTGTATATCCTGGGAAAGACTTTTCTGCTGTTGGCCAGAGAACTCTGCATTAACGCGCCTGCTGTCGATCCATGTCTGTATATTCCACGCTTTGCACACATGTTGGAATTTGGAGAAAAAACCCATGAAGTGTCCATGACTGCTCTGAGACTGCTGCAGAGGATGAAGAGAGACTGGATGCACACAGGACGCAGACCATCTGGACTCTGTGGCGCAGCTCTGTTGGTGGCGGCCCGCATGCATGAATTCCGCCGCACGGTGAAGGAGGTCATTGGTGTGGTGAAAGTATGTGAGGCGACTCTCAGAAAGAGGCTGACAGAATTCGAAGACACACCCACCAGTCACTTGACGATTGATGAGTTCATGCGAGTGGACCTGGAGGAGGAGTGTGATCCCCCTTCTTTCGTTGCTGGTCAAAAGAAGTTAAAGATCCAGCAGctGGAACAGGAGCTGGCCAGGAAGCTTGATGAATATCAAGGTGAGATCAGCTCCTATCAGGATGAGATTGAGACAGAACTGGAGAACAGCAGGCCTAAATTGAGAGGAATTTATGCCATGTATGCAAGAGAAGaCACCAATGATGGCAGTCTGTCTCTGGTGTCGGACCTCGCGGGAGATGAAGACATGGAAGATGAGGAGATGGAGGCTGCAGCTCAGCACCTCAGTGAGGACTTCATCAACCAAGTGTTACCTGAACTGGAGCAGGGACCTCAGGGGGGCACAGAGGCACAGGAGCAGGGCAAAGAGGTAGCAGAGCTACCTAGTGGCTCCACCCATGTGCCACTGACTTCACTGCTTGGCCCGCTTCCCAGCGCTGCCAGCCTTGGCCTCACAGACTCTATCCGCCATTGCATGACTGAGGAGGAGGCGGATGAGGACAAGTCAGATAATGGCGAACTTGATCTGGAAGGCATCGACGAGGATGAGATCGAAAAGTACATTCTCAATGAGAAGGAGGTGCAGGCTAAGACAGAGCTGTGGATGAAGCAAAATGAGGAGTATCTAAGGGAGCAGAAAGaaaaagaagagaggatAGCTAAGGAGAAAGAGCAAGGGATCTATAAGGAGAAGcccaaaaaaacatccaaaaggCGAGAGCCCATTCGGGCCAGCACTGCAGGAGAGGCAATAGAGAAGATGCTGGAACAGAAGAAGATTTCAAGCAAAATTAATTATGATGTACTGCGAGACCTGAACAGCAAAGGCAGCAGCAGCCCTGCACATAAGACAGAGGAAGAGTCTGGTATTGTCCCTGGACGTAAGAAGCTCACCCGCCGCAAGAAACAGCCCAACAAGAGCAATCTGGGTCTGGCCAAGCCTGCAAGCCTCATGGGGAAAAGGCTCCGCCCCCTTATATCTTCAAATCCCAAGAAGAAAAGAGCAGCTACACAGATTGTGCCCAGTGCTGTGATGCTGCCGCCAGTGACCCCTGAGACTCCGCCAGCCCCTACTCCTCCTCCAGTCATAGAGAGTGGCCCTGTGACATATGAGGAGCCCactgaggaagaagaggacGAAGAAGTGGAAGAGCCCTGTGTCAGTGCTATGAAGCTTATGGGAGGAAACGAATATGGCTGTGAAGCCGAAGAGGAGGAAGTTTTTTAATGCACAGTGTTTGTCTTCCCGAAAACAAGCTATGATTTCGTCAGCATCTGAGCGATGTCTTCTCCCCATgtagagacaggagagagagaaaaacagggcTTGGGCATGTGTGCTATTGTCATTACCATGAAGGAACATCTATGTGTCAGTGAACTTGTTCAACTCCTGCAGCATCTGAGACAGTAGAGGGACATCTGAGGGTGTTTGTGCGACATGTGGGAAACACATGACTGAAGACAAGAACTGTAGATACTTGAACTATTAGACACATGCTAATCCACCAGATGTGCATTGCTGTAATTACGTATAGGAAAACTGCTAAACAAACCATACATGTGCTAAGAGGAAACCTAATAAGTTGTTGAACATCTAATTATGTTGTGATGCAGCTTTAGAATCCGCCGATGTAGCATTCATTTAGGAATTAAGCCCACTCAGGTGATGTTTGTATGATCAGTGACAGATTTCATCCTCATTTTATTCACACTTCTGTGTAATATAATAgttgtttctgatgtttctAGGTTGACagcaattgttttaaaaatgcttgAAGGTGCTCTGATAATAGATGTcatattttgaagaaaaaaattttatgttatgtaatggatttatttttgtgtcGTTTTAGTCTTGTCAGAGTTTTAGCTTTGTTAAACTCTATAATATTGGCCCTCATGTTAGCATATGAGTGCACATATGTAtaaatttgtataaatgtaCATAATACCTATTGAAGTTTTGTCACTTGCTTCGTTTCGATGAAAATGCAATGTTTccgttttaatttttaattacatatgtTGATGTAATGTATTATGCATCACTGTTTGTTACTGTGATATTctcctgttgttgttttttctgctgGCTACCTTGAAACCCTTTAGGTCTCTATTAAATTTCATAAGAAACA

Function

symbol description
brf1b Predicted to enable RNA polymerase III general transcription initiation factor activity and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Acts upstream of or within cerebellum development and thrombocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of transcription factor TFIIIB complex and transcription preinitiation complex. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in cerebellofaciodental syndrome. Orthologous to human BRF1 (BRF1 RNA polymerase III transcription initiation factor subunit).
brf1 Predicted to enable RNA polymerase III general transcription initiation factor activity and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Predicted to be involved in DNA-templated transcription, initiation and transcription by RNA polymerase III. Predicted to act upstream of or within regulation of mRNA stability. Predicted to be located in nucleoplasm. Predicted to be part of transcription factor TFIIIB complex and transcription preinitiation complex. Predicted to be active in nucleus. Implicated in cerebellofaciodental syndrome.

NR:

description
transcription factor IIIB 90 kDa subunit-like

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944507.2 False 3194 mRNA 0.47 19 7885793 7945812
XM_026944508.2 True 3230 mRNA 0.47 20 7885793 7945812

Neighbor

gene id symbol gene type direction distance location
trnaa-cgc_6 NA coding upstream 1077 7884645 ~ 7884716 (+)
trnaa-cgc_5 NA coding upstream 2504 7883218 ~ 7883289 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding upstream 53767 7785422 ~ 7832026 (+)
rd3l LOC108257848 coding upstream 109432 7774492 ~ 7776361 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding upstream 118099 7724306 ~ 7767694 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding downstream 142875 8088687 ~ 8125663 (+)
esr2a LOC108258142,LOC108412120 coding downstream 227350 8173162 ~ 8190581 (+)
LOC113545195 l3hypdh,LOC107684001 coding downstream 350802 8296614 ~ 8305599 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding downstream 500504 8446316 ~ 8459728 (+)
LOC113545337 LOC108257647 coding downstream 604130 8549942 ~ 8557745 (+)
G291644 NA non-coding upstream 48713 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 217988 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 219784 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 270813 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 363670 7521924 ~ 7522123 (+)
LOC117599748 NA non-coding downstream 140 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 180209 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 363430 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 519025 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 525135 8470947 ~ 8473728 (+)
atp5mpl NA other upstream 103785 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 866107 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1725753 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2084100 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2906393 4941951 ~ 4979400 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 97574 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 542835 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1047701 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1128216 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1957938 9903750 ~ 9950731 (+)

Expression


Co-expression Network