LOC113545285 (LOC108257967)


Basic Information

Item Value
gene id LOC113545285
gene name LOC108257967
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4823038 ~ 4831944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944556.2
aTTGGCAAAAGAGGGTAAAGTTCAAGCAGTTGctttgtgcaaaagtttgttaCATGGACTTTTTATGACAgaacataacacacaacagttaACAGGTAAAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCAATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGGTATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTTGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTTCACGTCTGAGCGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGTTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGGATGCTTGACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGTGAAACCAAATGTGCGAGAGTTCCGAGGCTCGACTGTTGTATTTGATAATGAGGCAATCGAAGATGGGATAGATGCAGTTATCTTCTGTACAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTATAACGGAAATGCAGGCAAGATGGGCCGCCCGAGTCTTTAAAGGTTTAAACCGACTTCCTCCCGTATCAATAATGCACAAGATCACAGAGAAAGATTGGAAGGCAACAATGAAAAGATACTCTTGTCCAAAGAAAGCTACTCTCGAGGTGGACTATATCCCTTATTTGGATTCCATCGCACAGGAAATCGGTGTGCGTCCCAACCTCTTGTGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCTGCACCCCGTACCAGTTTCGGCTGTGTGGGCCGGGTCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAGTGGGAGCGTGTAGCCCAGCCATTCAAGACACGCCCCATTCCAGAGCACAAAACTTCTGGACTACACTACTGGCTGAGTCTGGCAGGAGGGGTGATGCTGATTTTTGCTCTCATTCAATTGCAGAAGAGAAATAAACTTTTCTTCAGTGTCTGATTACATATAGTATGGCCTCCATTGCATAGTCTGCTCTAGAGATTGCATTTATGTAGATTTCTACTCAGTAATTGTCACTTGGAAATGATATTTgtgcacaaataaaaattattgtGAAAGGTT
>XM_026944557.2
CTGATTATACAAATTGTCTATGGTGTCtagtggcagtgtgtgtatgcagctTTGAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCAATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGGTATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTTGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTTCACGTCTGAGCGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGTTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGGATGCTTGACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGTGAAACCAAATGTGCGAGAGTTCCGAGGCTCGACTGTTGTATTTGATAATGAGGCAATCGAAGATGGGATAGATGCAGTTATCTTCTGTACAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTATAACGGAAATGCAGGCAAGATGGGCCGCCCGAGTCTTTAAAGGTTTAAACCGACTTCCTCCCGTATCAATAATGCACAAGATCACAGAGAAAGATTGGAAGGCAACAATGAAAAGATACTCTTGTCCAAAGAAAGCTACTCTCGAGGTGGACTATATCCCTTATTTGGATTCCATCGCACAGGAAATCGGTGTGCGTCCCAACCTCTTGTGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCTGCACCCCGTACCAGTTTCGGCTGTGTGGGCCGGGTCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAGTGGGAGCGTGTAGCCCAGCCATTCAAGACACGCCCCATTCCAGAGCACAAAACTTCTGGACTACACTACTGGCTGAGTCTGGCAGGAGGGGTGATGCTGATTTTTGCTCTCATTCAATTGCAGAAGAGAAATAAACTTTTCTTCAGTGTCTGATTACATATAGTATGGCCTCCATTGCATAGTCTGCTCTAGAGATTGCATTTATGTAGATTTCTACTCAGTAATTGTCACTTGGAAATGATATTTgtgcacaaataaaaattattgtGAAAGGTT
>XM_026944559.2
aTTGGCAAAAGAGGGTAAAGTTCAAGCAGTTGctttgtgcaaaagtttgttaCATGGACTTTTTATGACAgaacataacacacaacagttaACAGGTAAAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCAATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGGTATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTTGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTTCACGTCTGAGCGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGTTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGGATGCTTGACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTATAACGGAAATGCAGGCAAGATGGGCCGCCCGAGTC
>XM_034313461.1
aTTGGCAAAAGAGGGTAAAGTTCAAGCAGTTGctttgtgcaaaagtttgttaCATGGACTTTTTATGACAgaacataacacacaacagttaACAGGTAAAAGATCCACACTATGGCTCGGCATGTTGCTGTGATTGGAGGAGGAAGCTCTGGACTGACCTGCATAAAGTGCTGCTTGGATGAGGGTCTAGAGCCAGTGTGCTTTGAGAGCAGCAATGACATTGGAGGACTCTGGAGGTTTAAGGAGACACCAGAGCCTGAACGCTCCAGCATGTACCGCTCACTGGTCGTAAATACCTCAAAAGAGATGATGTGCTTTAGTGATTTCCCCATGCCAGCACACTACCCAAACTACATGCACCACTCCATGCTGCTGAACTATTTACGGCTGTATGCTGAGCACTTTGACCTGCTCAAGTACATTCACTTCCAGaCAACAGTGCTCAGTGTGAGACAGAGGCATGACTTCTCTCACACAGGTCAGTGGGAGGTGATAACTGAGGACAGAGATggacacaaagaaacacacgtGTTCGATGGGGTGCTTGTATGTTCAGGAAGCTTCACACACCCTGTTACACCCCTCTCAGCATTTCCTGGTATAGACACGTTTCCAGGGAAGTGCTGCCACAGTTGGGAATATAAGGATCCACATTCCTTCAATGGGAAGAGGGTGGTGGTTATTGGCATTGGCAACTCTGGTGGAGACATTGCTGTTGAGATCAGCAGAGTGACAGAAAGAACTTTTCTGAGCATGCGTGGAGGTGCATGGGTTGTGAGCCGTTTGTCTACCGGTGGCCTGCCTTTGGACATGAACATGATTTCACGTCTGAGCGCCCTTCTGCTGCAAGTGTTTCCTCGAGCTCTGCTCAGTTGGGCAGTGGAGAGATTCTACAATCAGAAATATAACCACAGGCTGTACGGACTGCAGCCCAGCCACAGGATGCTTGACCAACGACCCATCATTAACGATGAGCTACCAGGACGCATCCTTCAGGGGGCACTGCAGGTGAAACCAAATGATACAAGGCAAGCTTCCCATTCTTACTGTCTTCAAAGAACAACGATCCTGTGGGGGAAGTGAGCCTCTACAGAAGAGTCTTCCCTCTGTTCCTAGAGCACCCCACACTGGCCTTCATAGGGTTACTCAACGCCTCAGGGCCTATAATGCCTATAACGGAAATGCAGGCAAGATGGGCCGCCCGAGTC

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944556.2 True 1863 mRNA 0.48 9 4823341 4831944
XM_026944557.2 False 1817 mRNA 0.49 9 4823038 4831944
XM_026944559.2 False 1196 mRNA 0.49 8 4823341 4830815
XM_034313461.1 False 1208 mRNA 0.49 8 4823341 4830815

Neighbor

gene id symbol gene type direction distance location
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding upstream 1027 4816687 ~ 4822011 (+)
LOC117599796 NA coding upstream 180682 4641793 ~ 4642356 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 241257 4561161 ~ 4581781 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 265551 4453316 ~ 4557487 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 372116 4447647 ~ 4450922 (+)
LOC117599802 LOC108257967 coding downstream 3142 4835086 ~ 4846034 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 15637 4847581 ~ 4854725 (+)
prrc2c prrc2c,LOC107712868 coding downstream 27379 4859323 ~ 4886501 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding downstream 100545 4932489 ~ 4939511 (+)
suco suco,LOC107712873,LOC107687343 coding downstream 166204 4998148 ~ 5048442 (+)
G290009 NA non-coding upstream 8242 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 16458 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 20010 4802813 ~ 4803028 (+)
G289995 NA non-coding upstream 67303 4755506 ~ 4755735 (+)
G289989 NA non-coding upstream 91726 4731085 ~ 4731312 (+)
G290028 NA non-coding downstream 64178 4896122 ~ 4896387 (+)
G290030 NA non-coding downstream 67023 4898967 ~ 4907812 (+)
LOC117599804 NA non-coding downstream 315241 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 421573 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 470686 5302630 ~ 5306902 (+)
LOC113545190 NA other upstream 213437 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 484739 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 513109 4248330 ~ 4309929 (+)
G289531 NA other upstream 752671 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 834915 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 110007 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 903529 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1303976 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2180798 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2945653 7777597 ~ 7782008 (+)

Expression


Co-expression Network