LOC113545286 (LOC108258122)


Basic Information

Item Value
gene id LOC113545286
gene name LOC108258122
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9389746 ~ 9412235 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944560.2
GCTGCGCGTGCCTCCGCTGTCATTGGTGCGGCTGAAGTTGAGAGCAGCTTGCTCGTGCCGAAGCAGGAAGAGGACAGCGGGCAGCCAGCTAGCGTCCATGCCACACATCAGCCCTCTGCCTGGCCTTTTAAACACAAATCATAACAAAAAACCAAACATCTCCTTCGACGTTCAGCTGGATTGTGTCTTTAACTATTCTCTTGGAAAGCATGTGATGAGCCAAGCTCAGAAAAAGGTCTCCCTCAGCCAGAGCTGTGGCAAGGGCTGTAACCATGTAGATGGTTGTCCCCATGGTAAAACCATGGGTAGAGCTTGGCCTGAGCATTGTTTGAAGGAGGCCAAGGCACTAAAGCATACAGCCAGTAAAGACAAGCAAAAGAGACAACAGCACATGGAAGGATGGCTCCATGATGGATGTAAGACAGGAGCCAAGTTAAAAAAGGGCAGGATTCTGAAGGTTGTGGCCAAAAAAGGCAAGGCAAAAGTGTCCAAGAAATTGAGGGAAGAGCGGAATAGGAAGCTTTACCCTCTACGACGGAGAAGTAACAAATCAAATGATGAGGCCTTAAGTTGCCATGTCCTGCTTACTCGTCTGGAGGAGAATGCCTTTGAACAGGACGGTGACTTGCATGAGGAAGAGCCAAATGCAATTTCAAAAAGATGTCggcaaaaaaagagaagcagacCCAACCAAAAGCTAGTAAACACCAATAAATCATTACATATACCATCTAAAACTAAATATGAAGCAAGTACTAATACAATTCTAGCTCAGGAGCCCCGTAAACGCCGGCTTGCCTCTCTTAATGCCGAAGCTGTCAACAGCCTGCTGCTGGAGAAAACAGATGTACCACTAAGCAGCAAACTCCCTAAGAAACATCACCATGAGACAGCACCTGTTTTTAATGACACAGATGATGCAAAAATTTGCTCACTGTCAAAAACTGTTACTCAAGCTCATGAGACTGAAATGTGCCAAAACCACAAGAAGGCCAAGAAGAGCAAGTCAGAAGAAAAAGACGACATTGATCTGAGTCTGTACATTCCTACTCCTAGACGCCTCGCCGGACTCAATGCTGCTGCTCTGCTGAAGCTCACAAGCTCCACTACAGGAAGCAAGCAGCGAGTAAAGACTGACAGTAAAGGTATTTGTGCTGCAGGGAAACAGACTGCATGCTGTAAATCCCGGGTGCAACAGCCTAAAAAGCAAGGACTCAAACAGGCTTTACCTCAGGATGGCGGTGCAGCATGTGAGATCAAGGGAAGTGAGTCTAAACTGAAGTGGGAAGGACCTGCTGACTGTCACTGCTTAGCCAAACCAGGGTATCATTCTCATGGCATGATGGGATATCCCATTAACATGGTAAAAGAAGAGCAGGTGGAAAGTGAGCTTGGTCCTTGCTACTGCTGTTCTGCAGAAGGCTCAGTGGAATATTGTCACAGGTTGGCACTGTATCTGAGCCAGAAGGCCTGTAGTGAGACAGACAAGCACCCCGTGGCCTCAGTGAAGCACGAATGCCTGGTTGCCCCATCTTCACTGGCCCACCCAGCCCTCACCCTCAGTGCCCACCCATGCCTGTGCGCAGACCCCTGCTACTCTAGTTACTATGTTCACTTTGCAAACCATGGGCCTCGTTCAGTTTGTCTAAGTACGCAGCCACTACCTTGTGCACACAGCTCCATGTGTCCCAGCAGGGTCCCTGCATCCAAGCTGCTGTCCTCCTCTGCCTCCCACACCTCAGGAATCTCACACCCTGCCTTCTGCAGTTCAGCGCGCTCTCCGTGCTGCAGTGAGGGCTGCAGAGTTGGCAGTTACACTTTCAGCGCTATGCAGCCTGTCACCAGCAGGGCGTGCTCTTATGCCACAGGCTGCTCCAACTGTAGCCATCAAATCAAAACAGAAGGCTACTCTTCACCTCAAGGGGATCAAAGTTCCTCTCTGCTTGTTCCACCAGCCCTGCCCCTTTCTGGCTGCCCATTGCCTAGGTTAAGCCCATCCTCCACTGTTCTGCCACGTCTTCTGTCCACTCTTGCagacaacagacagacagaggtcAGGCTCCGAGGGCCAAGAGAATGCCCTCAAAACACCAAACCACCCAATGGCTCTATTGGTGCAAGACCTACAAAACTGTCTCAGAAACAGCCAGTGCCCAGCCCAGCAAGTgccaaacaacagaaaaaagtaCATCGCCACCGCACCACAAATGGCTGGCGCCCTTTTGGAGAACCCACAGAGAAAGAAGTCTTTATTGCGGGTGAGGACATGACCGCACTGCGACAGTGTTATGAAGGAgtagagagagatggagaggtgATTCGGGTCAGAGACACAGTACTGTTGCGCTCCGGACCACGAAAGAAATCCTTACCCTATGTGGCTAAGATATCAGCTTTGTGGGATGACCCTAAGACAGGAGAGCTGATGATGAGCCTGTTCTGGTACTATcgaccagaacacacacagggaggcAGAgatcccagcatgcactgtgAGAATGAAATATTCGCCTCTCGGCATCAAGATGAAAACAGCGTGGCCTGTATTGAGGACAGATGCTATGTTTTACCTTTAGCACAGTACTGTAGATTTTGTGCCTTGGTAAAGCGCCGCTCAGAGGGTGTACCCGACAGCGTCCCCATGGTGCCCCGGCCCTCTGACAGTGCTGTTCCCACTCACCGACTTGTGCCCGATGATGTCGATCCCGAACTGGTTTACCTATGCCGCCATGTCTACGACTTCCGCTACGGCCGCATACTGAAGAACCTGCAGTAAGGGTGCAAGCCTGCATgcagcgcacacacacctgcacctcACTAATGATGGAAAGCCTTCATACTAAAACGATCCCTGTGCAACCTACTGGCCTTTTTGTTCTGAAAATCCTGATTTATTGTTGAAAACGTGAATGAtctgtttttcttattattcGCTCAGGAGGGTAGACCTCAGGGAGGTCTGGGGCTGTTGGACAAGACTATTTTTAACTGTCTCCACATTCCCAGAGTGGCAGCATCTAAAGTGAGTGCTATAGAAGAACGGAAATGACAGCTTTATTGAGTTCttgattagattttttaaattctcagtagaaatttagtttttatttactcttcCATTTAAAGTTGGAAGGGGTTCTGTATTTCTCTTTGGAGATCTGTCTTGTACACTGGACTATGACACTGGCAGGGGAAATCAGACGAAGCTGCCATTTCAGATGAAGAGTGTAATCAGATCCAATTTCTTCAAAGTGTCGCTTTAGTCGTAGGCTCAAACAGAGTCCTTAAGATAATCTCGCGCTCCTGTTTAGGAGAGCCTGGCTATTtggatgaaaaaagaaatgagaaagtgGACAGATTTTCTTGTTTGTGTTGGGGCAAATGCTTTCTGttcctgtgtttttctttatgtGGGACTAAGTGTAGTAAATTTTCCCATTTCATTGAATGGGCAAGTGACTCTTCAGTCCACCAATGAAATGTCTGCAAGAGTAGATGCTTGTCTTTTTCGTTCTTCTCATGTTTTGCTTTATTGCGGGGGGTGTCACTCTGTGATGTTTGTCTTTTTCGTTCTTCTCATGTCTTGCTTTGATGTCGTGCTTGTTTTCTTCTCATGTCTTGCTTTGCATGACATGCAGGTCACTCGGTTGGCAGCTAGTTTTGACCGAAACCTCTAAGAATTTAACTCCTATACTAAAACCAAAGGTCAGCACAGTGCTAATCTCTGTTGTCACTAAGTATCCCCCAGGATCTGTGCCCTATAATTCCACAGGAAGCAAAGCTGACACTTGTTTTTCAAGTAAAGATATTTATCATGTATTGAGTGGTGATACTTATAATACTTACAATGAACTTATTTGACACATTTATTTGATAAAATCCTGCATGTGTCCATTTTTCTTTGCTTCTAGTCACCCTAGTTAAATTGCACTAATCCATTccttgattttcttttctttcctcctctgctattattttaatttacatttaggTCTTCCTTTTTGATTCTATCACAGTTCATGACAGTGATTTGGTCAGCAAGGAAGTGCACAGGAAGGATAGAAACTTCTTTAtagaagtttttttatttataacagaaaaaaagaataaatgtataGCTAATTCTAACAACAGGAAAGTCATACTGTTTTGGCAGTTCTCTTTGTTAAGTATATGTGGTCTTGTTAACGTACATGTGTGATGTACCAACCTAAATGCAAGGGCGCTTTTACACCTGTTAATAATTTGACATGTCTGAATCAGAGCGAAATCGAAATTGTTGGTTTCACTTGCGATTTTTTTGGTTTGCTTTCACActacacataattaaacaaaccaaaaagcaaaaaacatcgGCTAAGGggtaggcttgtgcgatattgattTATCCCTGATtgtgattttccattttaaaatggaacccatagacttaaaaaaaaaaaggaaaatttccGTCATGGTTTAAGGAGAATAGGGGAGGTGTAATAATATAACCAGCTGTGCAATCGGAAACTACGGCAATCATGAAAACTCAGGTGGACTgtggatttttaagtgattctgcagtaatgcacagtaaatag
>XM_034313813.1
TGCAGttatgaaaagtgtgtgttgaaGAAGGCGTTGGGTTCGAGCGTGAGGAAAGCCATTTCAGGCTGATTGTACAGTTTGCAGGGTAACTGTACATCAGGGTTGTTCCTGCTGAGGGGAAGGACAGGGtggactgctgctgctgcgctTCTCCAGTCTTCAGCCACGGCTGGGAGATTCTCTTGGAAAGCATGTGATGAGCCAAGCTCAGAAAAAGGTCTCCCTCAGCCAGAGCTGTGGCAAGGGCTGTAACCATGTAGATGGTTGTCCCCATGGTAAAACCATGGGTAGAGCTTGGCCTGAGCATTGTTTGAAGGAGGCCAAGGCACTAAAGCATACAGCCAGTAAAGACAAGCAAAAGAGACAACAGCACATGGAAGGATGGCTCCATGATGGATGTAAGACAGGAGCCAAGTTAAAAAAGGGCAGGATTCTGAAGGTTGTGGCCAAAAAAGGCAAGGCAAAAGTGTCCAAGAAATTGAGGGAAGAGCGGAATAGGAAGCTTTACCCTCTACGACGGAGAAGTAACAAATCAAATGATGAGGCCTTAAGTTGCCATGTCCTGCTTACTCGTCTGGAGGAGAATGCCTTTGAACAGGACGGTGACTTGCATGAGGAAGAGCCAAATGCAATTTCAAAAAGATGTCggcaaaaaaagagaagcagacCCAACCAAAAGCTAGTAAACACCAATAAATCATTACATATACCATCTAAAACTAAATATGAAGCAAGTACTAATACAATTCTAGCTCAGGAGCCCCGTAAACGCCGGCTTGCCTCTCTTAATGCCGAAGCTGTCAACAGCCTGCTGCTGGAGAAAACAGATGTACCACTAAGCAGCAAACTCCCTAAGAAACATCACCATGAGACAGCACCTGTTTTTAATGACACAGATGATGCAAAAATTTGCTCACTGTCAAAAACTGTTACTCAAGCTCATGAGACTGAAATGTGCCAAAACCACAAGAAGGCCAAGAAGAGCAAGTCAGAAGAAAAAGACGACATTGATCTGAGTCTGTACATTCCTACTCCTAGACGCCTCGCCGGACTCAATGCTGCTGCTCTGCTGAAGCTCACAAGCTCCACTACAGGAAGCAAGCAGCGAGTAAAGACTGACAGTAAAGGTATTTGTGCTGCAGGGAAACAGACTGCATGCTGTAAATCCCGGGTGCAACAGCCTAAAAAGCAAGGACTCAAACAGGCTTTACCTCAGGATGGCGGTGCAGCATGTGAGATCAAGGGAAGTGAGTCTAAACTGAAGTGGGAAGGACCTGCTGACTGTCACTGCTTAGCCAAACCAGGGTATCATTCTCATGGCATGATGGGATATCCCATTAACATGGTAAAAGAAGAGCAGGTGGAAAGTGAGCTTGGTCCTTGCTACTGCTGTTCTGCAGAAGGCTCAGTGGAATATTGTCACAGGTTGGCACTGTATCTGAGCCAGAAGGCCTGTAGTGAGACAGACAAGCACCCCGTGGCCTCAGTGAAGCACGAATGCCTGGTTGCCCCATCTTCACTGGCCCACCCAGCCCTCACCCTCAGTGCCCACCCATGCCTGTGCGCAGACCCCTGCTACTCTAGTTACTATGTTCACTTTGCAAACCATGGGCCTCGTTCAGTTTGTCTAAGTACGCAGCCACTACCTTGTGCACACAGCTCCATGTGTCCCAGCAGGGTCCCTGCATCCAAGCTGCTGTCCTCCTCTGCCTCCCACACCTCAGGAATCTCACACCCTGCCTTCTGCAGTTCAGCGCGCTCTCCGTGCTGCAGTGAGGGCTGCAGAGTTGGCAGTTACACTTTCAGCGCTATGCAGCCTGTCACCAGCAGGGCGTGCTCTTATGCCACAGGCTGCTCCAACTGTAGCCATCAAATCAAAACAGAAGGCTACTCTTCACCTCAAGGGGATCAAAGTTCCTCTCTGCTTGTTCCACCAGCCCTGCCCCTTTCTGGCTGCCCATTGCCTAGGTTAAGCCCATCCTCCACTGTTCTGCCACGTCTTCTGTCCACTCTTGCagacaacagacagacagaggtcAGGCTCCGAGGGCCAAGAGAATGCCCTCAAAACACCAAACCACCCAATGGCTCTATTGGTGCAAGACCTACAAAACTGTCTCAGAAACAGCCAGTGCCCAGCCCAGCAAGTgccaaacaacagaaaaaagtaCATCGCCACCGCACCACAAATGGCTGGCGCCCTTTTGGAGAACCCACAGAGAAAGAAGTCTTTATTGCGGGTGAGGACATGACCGCACTGCGACAGTGTTATGAAGGAgtagagagagatggagaggtgATTCGGGTCAGAGACACAGTACTGTTGCGCTCCGGACCACGAAAGAAATCCTTACCCTATGTGGCTAAGATATCAGCTTTGTGGGATGACCCTAAGACAGGAGAGCTGATGATGAGCCTGTTCTGGTACTATcgaccagaacacacacagggaggcAGAgatcccagcatgcactgtgAGAATGAAATATTCGCCTCTCGGCATCAAGATGAAAACAGCGTGGCCTGTATTGAGGACAGATGCTATGTTTTACCTTTAGCACAGTACTGTAGATTTTGTGCCTTGGTAAAGCGCCGCTCAGAGGGTGTACCCGACAGCGTCCCCATGGTGCCCCGGCCCTCTGACAGTGCTGTTCCCACTCACCGACTTGTGCCCGATGATGTCGATCCCGAACTGGTTTACCTATGCCGCCATGTCTACGACTTCCGCTACGGCCGCATACTGAAGAACCTGCAGTAAGGGTGCAAGCCTGCATgcagcgcacacacacctgcacctcACTAATGATGGAAAGCCTTCATACTAAAACGATCCCTGTGCAACCTACTGGCCTTTTTGTTCTGAAAATCCTGATTTATTGTTGAAAACGTGAATGAtctgtttttcttattattcGCTCAGGAGGGTAGACCTCAGGGAGGTCTGGGGCTGTTGGACAAGACTATTTTTAACTGTCTCCACATTCCCAGAGTGGCAGCATCTAAAGTGAGTGCTATAGAAGAACGGAAATGACAGCTTTATTGAGTTCttgattagattttttaaattctcagtagaaatttagtttttatttactcttcCATTTAAAGTTGGAAGGGGTTCTGTATTTCTCTTTGGAGATCTGTCTTGTACACTGGACTATGACACTGGCAGGGGAAATCAGACGAAGCTGCCATTTCAGATGAAGAGTGTAATCAGATCCAATTTCTTCAAAGTGTCGCTTTAGTCGTAGGCTCAAACAGAGTCCTTAAGATAATCTCGCGCTCCTGTTTAGGAGAGCCTGGCTATTtggatgaaaaaagaaatgagaaagtgGACAGATTTTCTTGTTTGTGTTGGGGCAAATGCTTTCTGttcctgtgtttttctttatgtGGGACTAAGTGTAGTAAATTTTCCCATTTCATTGAATGGGCAAGTGACTCTTCAGTCCACCAATGAAATGTCTGCAAGAGTAGATGCTTGTCTTTTTCGTTCTTCTCATGTTTTGCTTTATTGCGGGGGGTGTCACTCTGTGATGTTTGTCTTTTTCGTTCTTCTCATGTCTTGCTTTGATGTCGTGCTTGTTTTCTTCTCATGTCTTGCTTTGCATGACATGCAGGTCACTCGGTTGGCAGCTAGTTTTGACCGAAACCTCTAAGAATTTAACTCCTATACTAAAACCAAAGGTCAGCACAGTGCTAATCTCTGTTGTCACTAAGTATCCCCCAGGATCTGTGCCCTATAATTCCACAGGAAGCAAAGCTGACACTTGTTTTTCAAGTAAAGATATTTATCATGTATTGAGTGGTGATACTTATAATACTTACAATGAACTTATTTGACACATTTATTTGATAAAATCCTGCATGTGTCCATTTTTCTTTGCTTCTAGTCACCCTAGTTAAATTGCACTAATCCATTccttgattttcttttctttcctcctctgctattattttaatttacatttaggTCTTCCTTTTTGATTCTATCACAGTTCATGACAGTGATTTGGTCAGCAAGGAAGTGCACAGGAAGGATAGAAACTTCTTTAtagaagtttttttatttataacagaaaaaaagaataaatgtataGCTAATTCTAACAACAGGAAAGTCATACTGTTTTGGCAGTTCTCTTTGTTAAGTATATGTGGTCTTGTTAACGTACATGTGTGATGTACCAACCTAAATGCAAGGGCGCTTTTACACCTGTTAATAATTTGACATGTCTGAATCAGAGCGAAATCGAAATTGTTGGTTTCACTTGCGATTTTTTTGGTTTGCTTTCACActacacataattaaacaaaccaaaaagcaaaaaacatcgGCTAAGGggtaggcttgtgcgatattgattTATCCCTGATtgtgattttccattttaaaatggaacccatagacttaaaaaaaaaaaggaaaatttccGTCATGGTTTAAGGAGAATAGGGGAGGTGTAATAATATAACCAGCTGTGCAATCGGAAACTACGGCAATCATGAAAACTCAGGTGGACTgtggatttttaagtgattctgcagtaatgcacagtaaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944560.2 True 4583 mRNA 0.45 7 9398808 9412235
XM_034313813.1 False 4565 mRNA 0.45 7 9389746 9412235

Neighbor

gene id symbol gene type direction distance location
LOC113545203 NA coding upstream 3951 9384881 ~ 9385795 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding upstream 51386 9336792 ~ 9338360 (+)
lamp5 lamp5,LOC107704368 coding upstream 124895 9258394 ~ 9264851 (+)
LOC113545235 plcb4,LOC108258041 coding upstream 134497 9183432 ~ 9255249 (+)
bmp2b LOC108258023 coding upstream 347839 9037111 ~ 9041907 (+)
LOC113545338 LOC108257621 coding downstream 6875 9419110 ~ 9424569 (+)
evlb evlb,LOC108258102,LOC108411639,LOC103359910 coding downstream 14210 9426445 ~ 9463533 (+)
yy1b yy1a,LOC108258103,LOC108411685,LOC107712210,LOC101066055 coding downstream 51746 9463981 ~ 9474164 (+)
entpd5b LOC108257529 coding downstream 83010 9495245 ~ 9505126 (+)
LOC113545265 c25h14orf37,LOC107717645,LOC107659812,LOC107574488,LOC107713862 coding downstream 130173 9542408 ~ 9551941 (+)
G292102 NA non-coding upstream 684502 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 803844 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 806269 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 878970 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 916018 8470947 ~ 8473728 (+)
G292643 NA non-coding downstream 2316 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 142202 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 175465 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 199753 9611988 ~ 9612612 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding downstream 201190 9613425 ~ 9616591 (+)
LOC113545247 plcb1,LOC108258091 other upstream 210573 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 392750 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 855246 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 1315302 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1607738 7777597 ~ 7782008 (+)
G293016 ileu other downstream 491515 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 746720 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1269075 10681310 ~ 10682664 (+)
G293528 NA other downstream 1606171 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 2149187 11561422 ~ 11579249 (+)

Expression


Co-expression Network