LOC113545289 (LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143)


Basic Information

Item Value
gene id LOC113545289
gene name LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4447647 ~ 4450922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944565.2
aaacagaaaacattattattattattattatttaattctgcTCCAAAGGCTTTGCCTCGACAAGTAAACAAGGTCATAACACGGGAAACAAATCGCAATTGGGCGAAGGAGGGACATACGGAAGCCGcAGCACAGATCAAGGTCACGCATTTAGATGCGCTCACGCGTGGGCTCTCCGAGTCGTGTAAAGGATCACAGGTCTGTGCAGAATGGCAGGACTGATTAACTTTGAGGACGAGAAAGAAGTGAAAGAGTTCTTAGACAATTTGGGAGTGGAGTACAGCTATCAGTGCTACCAGGAGAAAGACCCTGAAGGTTGTCAGAGGTTGGCAGATTACTTGGAGGGGGTGAAGAAGAACTACACTGAGGCCGCTCAGGTTCTCAAGCACAGCTGTGAGAGTTATGGCCATGGAGAGAGCTGCTACAAGCTTGGGGCCTACCATGTCACAGGCAAAGGTGGGGTGACAGAGTGTCTAAAAAGTGCCTACTCCTGCTTTGTCAAGGCATGTAATGCCAAAGGAAAGAAGACAGTGGATGCATGCCACAACGTCGGCTTGCTTGCCCATGATGGTCGAGCCTTAGAGGGTGGTCCAGACCCTGTAGAGGCTCGTCGCTACTATAAGAAAGCTTGTAAGGGAGGGTTTGCACCTAGCTGTTTCAATTTAAGTGCCCTATACATCCAGGGCTCAGCAGAAGTGAAAAAAGACATGCCTAAGGCTCTAAAGTATGCCATGCGGGCCTGCGAGTTGGGCCACGTTTGGGGCTGCACCAACGCCAGCCGCATGTACAAACTGGGTGATGGCACGGAGAAGGATGACGAGAAGGCGGAGAAGCTAAAGAACAGAGCAAAAGAACTTCATGGACAAGAGAAAGAGCGGCAGCTGAAATTCGGAGAGTGAGATGGAGAAAAAGTGCTAGATTCAGTGTGATATTTGGGTTCTCACTGTCGTGCTGCTATACATGATGAAAGAATGTGTGAGAAGTGTAGCTGCATAATGTGTGTATTGGGGCCTGTTTAAGAACTGTGCTATTGCATTTGATTAGTTGATGGTTGCAAACTCAGACAAATGATCTTTATCTGTATGTTTCCATTTGTAAATCTGACAGTACTGTACGGTAATCGAGTTAATAAATGTggtttttaatgcattaatgacA

Function

GO: NA

KEGG:

id description
K18180 COA7, SELRC1, RESA1; cytochrome c oxidase assembly factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944565.2 True 1158 mRNA 0.46 4 4447647 4450922

Neighbor

gene id symbol gene type direction distance location
echdc2 echdc2,LOC107669145 coding upstream 15292 4425634 ~ 4432355 (+)
LOC113545214 LOC108257527 coding upstream 27814 4407768 ~ 4419833 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding upstream 51527 4366765 ~ 4396120 (+)
trnad-guc_22 NA coding upstream 97768 4349808 ~ 4349879 (+)
trnad-guc_19 NA coding upstream 109673 4337903 ~ 4337974 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding downstream 2394 4453316 ~ 4557487 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding downstream 110239 4561161 ~ 4581781 (+)
LOC117599796 NA coding downstream 190871 4641793 ~ 4642356 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 365765 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 372116 4823038 ~ 4831944 (+)
G289831 NA non-coding upstream 12857 4433235 ~ 4434790 (+)
G289521 NA non-coding upstream 84559 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 94846 4350748 ~ 4352801 (+)
G289615 NA non-coding upstream 112688 4265383 ~ 4334959 (+)
G289619 NA non-coding upstream 117375 4319461 ~ 4330272 (+)
G289866 angptl1,angptl1a non-coding downstream 79006 4529928 ~ 4539840 (+)
LOC117599674 NA non-coding downstream 173220 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 253740 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 280163 4731085 ~ 4731312 (+)
G289995 NA non-coding downstream 304584 4755506 ~ 4755735 (+)
trnad-guc_17 NA other upstream 109348 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 137718 4248330 ~ 4309929 (+)
G289531 NA other upstream 377280 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 459524 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 464953 3943494 ~ 3982694 (+)
LOC113545190 NA other downstream 150133 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 491029 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1284551 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1684998 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2561820 7012742 ~ 7019686 (+)

Expression


Co-expression Network