tnfaip2a


Basic Information

Item Value
gene id tnfaip2a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6833386 ~ 6848533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944567.2
TCCTCCCTGACTACATGACCGGTATATAAAGCATCAGTGAGAGGCAGTCTCAAACAGAACGGAGAAACGACTGCACTGACACACAGAAGAGCCTGAAAAAAACCAAATCTGGCTTAATCCTTAATTCCTGCTTAATCATGATGAAGACCATCAATCTCCCCACAGGACCCTTTCGGAAGAAAAGTAAAGGTGAAGCAGAGGCTCACAACGGTGATGCTGTATGCACTACCATGACTAAAGAGCAATCTGAGgagaaatgcaaaaataagCTAAAAATTCTAGGCATATTGAAAAAAACTAATACTAAAAACCACCAAAAAGCAGCCACGGACACTCCAGATATCCCAGTAATCTTGGATTTCAACCAGAATCTAGCACAGAATCATTTGGCAGAAGCTAGCCAGCAACTTTTAGCACGGGAAGATCACCTCTTCAGACCACAATCATCAGATGAGGAAGTGATTTGCACTGAGGATGAAAAGGACAGTTTGAATAAGGACTATGAAACTTTGATGTTTCATCTAAGGATGGCTGTCAATGAGTCCTTTAACCAGGAGAATCAAGAGAGACTGAGCAGTGCTATAAAGGCTATATGTCAGCAGGAGGAAAAAGACAGGCACTGGGAGGAAGCAGCAGAAGAGAAGCGTCCATGTTGGAGGCCCCTAAAATGCAGAGAGATCCATGATATGTTGCTCAAGAACGTAGTAGACATACGGCTGCAGCAAGAACACGAAGAAGAGAATGGGGCAGACAAGCTATCCACCTCCGTGAAGAGAAAGGTGTGTCGGATAGGCAAGCGCATTCAAAAGGACCTGCTCCAAGTTGTCAGAGATGTGCGGCAATGTTACACACCAGAGTTTGACATTTGCAACATGTATGCTCAGCTCTACCATCAAGCTTTCTCCTCAAAACTGATGGAGCATGCTCGAACCAACATTGAATTTCAAGATTGCATCTACATCCTAGGTTGGATTCATGTTTATTATCCAAAGAATATTTTGCACCAGGATGAACTGAAGCCACACATCAACACTGAATCATTGGGAGCTTTGTTACTTGAGGAAGATCGTAAGTCACTGGAGGAGCAGTATCTGTCACACAAAGAGGTGGAGGTCAGGACATGGTTGTCCAATGCTCTTAAAAAAGAGGAGGAAATTTGGCAGACAAGTAACAAACCTGAGCTCATCGATGGGTGCTACTTCTCCAATCTTGCTTTGGATGTTATACCTATTATTAACGGAGCCATGAATGAAACTGTGAGTATTCTGGGTAGCAGAGATAATGCTCAGAGAATTCTGCTTCAGCTGGACAGCTTCCTAATGAGCTATAAGAAATCCATAGCTGATCTTATCAAAGGAAAGCACATCAATATCCCCGACACCCTGAAAGCCAATCTGTTTAACATCAAGGAGTTACGGGAGTATGTAGAGAAACTCGAGGATCTCTCGGATGAAGTGAAAGAAAGGTTGCTGTCCATTCTATCAGAGATGAGAAACTCCTGTCACAGTTATTTCCTCAGCCCCATACACAAGGAACTCAAGGTGCAGTATTGTAAGCTGTGGACTCCAGCCTGGTTTTCAGAAAATCTTACGATTACTGAAGGTCTACTAAGGCTTCTCGAGGAGATGGTTCAGCATTTCTCAGACATACACTCTGCCTGCAAGAAGGAGTTGTTGAATCAGCTGCATTCTGAGGTGATGATTGAATATGTCAAGAGGATGTTAAAGGGGAAACTGAAACTAAAAGACAAGAACGACCAGGAGGCAGCTGCACGCTTTATGTGTGAGGACAATGCAAGAATAAATTCACTGTTCATCACAATTGGATCTGATGAGAAATGGCTTTCCCTGATTTTACCCAAAGTGTCAGAAGTGGTGAGGCTGCAGGACGCAGGAGCACTTCAGCTTGAGATAGTTACGCTGGCCAGAACCTACCCTGACATCAGTGAATGCCAAGTTCTTGCTCTCCTGGACTTGAAGGCAAACCTCTCCAAACCAGATGTGCGCAGCATAAAAAAGAGCCTGAACGAGAATAGGGATTCACCGAATGCTGAGCCCACAACAGCTTTCTTCAGTAATGTGCCTGTAAAAAAGAACTTCAAGAATGTGTTTTATCAGTGAAGCGTAATCACTTCACTGTAGCTGAAGAGAACCATTTAGAAGTTGCTCATACAAAGCAGTGTTATTGCTCATTATCAACTATTAAACCTGCTATAATATAGAGGTTATTTGTACATGCTAGCCTCACTAGCCTAGTTATAGATCACATATTGAAAAGGGACATTTTTAGAGACACAAGAATACAATCATATAATATTTCATGTCTGCTGTTATGTAAGAAACTGTCCATAGTGACTTTTCAATTTCCTATTTTACTCCTAATTATCCTATTCTGTCATGCTGGGAGTGGTCACCtgtgaatggtttgatgaggatgaaaatgaggAAAGTCATTTGCCTTCACAGTCAACAAATAGCAGCCCAACAGAATGAGCCTATGGGTAACCTCTATCCAGACATTCTTTATGCATTTAGTGTTtttaatgcactgtgtgtgttatttgtgtattCCCagtattcattttttgtttgagGAAACCAACGCAGATAGACTGCATCATGCTTGATTTGTACAGTACCTTTGTTATAAGTAATCGGTCCAAAAGTTCATTTGTTTGATGTATGCATTTATGTATGTAAAGTTTCCTTccctttacattttacaatgtgttgtatgttttatataaacatgaaaGTCTATTTCCTTGTTCTAGTACTTTGTATTCTAACCTTTTATTTAGTAAATGTATTACTGGGTATTAAAAGTATGTGATGGTCATGATT

Function

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944567.2 True 2843 mRNA 0.41 12 6833386 6848533

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 26045 6797339 ~ 6807341 (+)
LOC113545329 LOC108257524 coding upstream 133569 6691634 ~ 6699817 (+)
taf4b LOC108258144 coding upstream 157032 6661880 ~ 6676354 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding upstream 172802 6640967 ~ 6660584 (+)
aqp4 LOC108257544,LOC108414838 coding upstream 203412 6622927 ~ 6629974 (+)
LOC113545215 NA coding downstream 1823 6850356 ~ 6868031 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding downstream 35770 6884303 ~ 6893353 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding downstream 56988 6905521 ~ 6911188 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 138576 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 175474 7024007 ~ 7049333 (+)
G290935 NA non-coding upstream 105872 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 410420 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 490846 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 595470 6237714 ~ 6237916 (+)
LOC117599801 NA non-coding upstream 1014320 5815902 ~ 5819066 (+)
LOC117599731 NA non-coding downstream 81836 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 90658 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 133430 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 209850 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 371773 7220306 ~ 7227227 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 673346 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1031693 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1853986 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2223785 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2495087 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 164209 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 929064 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1194853 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1640114 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2144980 8993513 ~ 8996996 (+)

Expression


Co-expression Network