aqp4 (LOC108257544,LOC108414838)


Basic Information

Item Value
gene id aqp4
gene name LOC108257544,LOC108414838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6622927 ~ 6629974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944583.2
TAAACTGAATGATCACCAGACTGATTTGACTTGAGGAGTTGTATTTTTTACATGTTCTCATGAAGACAATGCTGCTCACCAAGGGATGAAAGAGGAGTTTTCTGACCGAAACAAAATCTGCGGTCGTTTTCGgaGGTGTCTGCCCTCGTGCCCCTGCACGTGTGAGCGAGTTATGGTTGCCTGTAAGGGTGTGTGGACAAAGCGGTTTTGGCGAGCAGTGTCTGGAGAGTTTTTGGCCATGTTGATCTTTGTGCTGCTCAGTCTGGGGTCCACTATCAACTGGGCAGCAACCACAAAGGACAGCACTCCTCCTCCTGACCTtgttctcatctctctctgtttcgGCTTGTCCATAGCCACACTCGTCCAGTGCTTCAGCCAAATCAGCGGTGCTCACATCAACCCAGCAGTCACAGTGGCCCTGGTGGCCACCCGTAAGCTGAGCCTGGCAAAGTGCATTTTGTATTTGGGAGCACAGTGTCTCGGGGCAATAGTGGGAGCAGCTATCCTGTATGGTGTGACTCCTCCTGCTGTGAGAGGGAACCTGGGGGTCACCTCGGTCACCGCTCATATCTCTGCTGGTCATGCCCTGGTGGTTGAACTCTTCATCACCTTTCAGCTTGTCTTCACCATCTTTGCCACCTGCGACCCAAAGCGCACTGACCTGAAGGGCTCAGCAGCACTGGCTATCGGCCTGTCAGTGTGCATCGGCCACCTGTTTGCTATCCCCTACACTGGTGCTAGTATGAATCCTGCTCGCTCATTTGGTCCTGCAGTCATCATGGGACAATGGGAAAACCACTGGGTGTACTGGTTGGGTCCATTAATGGGAGGTGTCCTGGCAGCAGCTCTATACGAGTACCTGTTCTGCCCTGACCCTGATCTAAAGAGACGCTATGGCAGCGTCATCTCTAGGACCTCCTTTCCCACTGCTCAGTTCCAAGGCATAGAGCCAGGCACTTTCTCCAGTGACCAAGCTCAGCTGATGATCAAGCAGCCAGCATTCACAGTGCTGGATGTGGAGCGTGctgagaggaaggagagagagacagctggcGAGGTGCTGTCCTCTGTATGA

Function

NR:

description
PREDICTED: aquaporin-4 isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K09866 AQP4; aquaporin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944583.2 True 1078 mRNA 0.53 5 6622927 6629974

Neighbor

gene id symbol gene type direction distance location
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding upstream 118796 6461728 ~ 6504131 (+)
dsc2l NA coding upstream 392375 6214741 ~ 6230552 (+)
trappc8 trappc8 coding upstream 495025 6090426 ~ 6127902 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding upstream 547882 6068607 ~ 6075045 (+)
igfbp1a LOC100305121 coding upstream 661742 5958431 ~ 5961185 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding downstream 10993 6640967 ~ 6660584 (+)
taf4b LOC108258144 coding downstream 31906 6661880 ~ 6676354 (+)
LOC113545329 LOC108257524 coding downstream 61660 6691634 ~ 6699817 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding downstream 167365 6797339 ~ 6807341 (+)
tnfaip2a NA coding downstream 203412 6833386 ~ 6848533 (+)
G290879 NA non-coding upstream 199961 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 280387 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 385011 6237714 ~ 6237916 (+)
LOC117599801 NA non-coding upstream 803861 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 815011 5807006 ~ 5807916 (+)
G290935 NA non-coding downstream 83953 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 204433 6834407 ~ 6834698 (+)
LOC117599731 NA non-coding downstream 300395 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 309217 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 351989 6981963 ~ 6982804 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 462887 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 821234 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1643527 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2013326 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2284628 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 382768 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1147623 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1413412 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1858673 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2363539 8993513 ~ 8996996 (+)

Expression


Co-expression Network