fam167ab (fam167a,LOC108258093,LOC108435018)


Basic Information

Item Value
gene id fam167ab
gene name fam167a,LOC108258093,LOC108435018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6905521 ~ 6911188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944595.2
tttctcatTCAAATCCAAGCGGAAAGTGGCGGAGCGGCGCGAGCGCGCGCGcaactcttttctttcttcgCGCGCGTCTTCCTCTCCTCCGTCTGCAGCGCCGTATAGCCgGATTTCCTAAACCCTGTTTCTTGCCTGAGGCCAGGaagaaaaataactaaattatgCTTTAAGGAAGAAGCATACATGATTTTACAAGCTTACATGATTTTTCATGCTCAAGGACAAGATGTGGATGTTCTCTATTTGGATGTTAAACATAAGAGGATGAATTACATCCCATATTCTGTCATTCCCTTTTGCCTGCAAACTCATTTGCACTTCCAAAGGTCCAGATCAGCTTTAGTGATCAGCTAAAGCAAAAACTAGGATGCATTAGCATTTCAGTTTATCTCCAGTTTATTTTTAACTActcttgtgtttgtgtaatagACAAGCCATGGACACATTGCCACAGATTAATGTAAACGACGTCAGTAGCCTGGACTGTGATAACGTGGAGGTTGCAGCAGATGACCATTTAAGAAATTTGAAGGCTTTGGCTGAGAGACTAAGACTACAGACCAGGAGACCCTCCTATCAAGAGTGGAAGGCCCAGGTAGAAGCTACCAGTGCCAAAGGACCATCAGACCCAACAAAGTCCACTGTGTTAGGTCAAGATACAGAACAGGAACACACAGACAGGCCCGAAAGAAGTGACCACAAGTTGGACTTAACACAAGAATGCAGCCTGACTTCAAGAAACCTGAAAGGGTTTGGGAATATTGATGAGGCTCTGATCTGGCTGAGGAAAGAACTGAAGGAGATGCGTTTGCAGGACCAGCAGCTTGCCCGCCAGCTCATGCGCCTGCGAGGAGATATCAACAAACTGAAGATCGAGCAGACGTGCCACCTGCACCGACGGATGCTCAATGATGCCACGTTTGGCCTGGAGGAGCACGACGAGCTCTCTGATCTTCTGTGTGATAGTCCTGTTACACCTGGGTTTGGTCTGTCAGCACCTCTCCGCCTGATTGGTGTCACTAAGATGAACATAAACACAAGACGCTTCTCCCTCTGCTAACCCAACAGTAACAGAGTTTATAAGTCACGCGCATCATGTCTTCAGTGTAAAAACAAGGATCttatatgaaaatgtatataGTGAAAAATATTTTGCGACATATTTTGTAACGAAACATGAAACTGGTAGCAGTAATGATGCGCTCACCAAGTAATTTGCTTTTACTGCTTTCATTGCTTTCTGCACTGTATACAGTAtgctgtattatttttaattacacatcAAGCCTTAtaagctcatttaaaaaaaatacttggaCAGTTAAGGCACACAGAATGTGGAGAAAGTATGCTTTAAaaattcttcttcattttgtatTGGTTTGTACATACGTGAACAAAATTTTCTACAGACATAATTATAGCAGAGACAGGAAAAGTAATCTCAAATACAAGAACGAATGCAATGTGCCAGCTTGACTTCATGTGCATGAAGcttatatttcagttttcatttcaatAAAATGTACTCAGATTTGTACATATGGCAAAGTATCTCAAATCAGGACCTCAGTAATTTATCAGTGGGACAGTTTGAATttcataatataaattattttgtttttaacattaaGATCAAGAAGAACATTTTCTATCTGCTCTGTATCTGATAAAGCGTTGACACTGAAAGCTTGGGTATAAAACACAGTGTATTGCTTTGATGACAGTTTTCAAAGTTTTGCATCTACTACtattactttcttttttgtgtCCTAGTTTTAGTGTGCAGGACAAGAGATTCTGGATTAATTTGAACATTCTCGAAGTTAAGTAAACCATTTACTCTACAGACGTCCCTCACATTTACTATGGTCTGTACAGAGAACTCACAGATCTCTTGGCACATATCcaaatgaggaataaaacatgatggggaatgttgttataggaaaataatcatagaTAGGatctaacagcatgtccagaggtcttttattcctcttataacccAGCAATTTGCTAACGAATACAactgttaatgtattaatgaaagACATGCTGagttttttaactttataagTTGTgcttaatgctgtggaatgtccttGAGACAGCTTCCtgttaacagctataaacagttgatCCCCCACTAGCCTCTTATTTTCCTTTATCTTGAACTTAATAATGCagcttatgttactgagaaaccataaa
>XM_026944596.2
cctcctttctcatTCAAATCCAAGCGGAAAGTGGCGGAGCGGCGCGAGCGCGCGCGcaactcttttctttcttcgCGCGCGTCTTCCTCTCCTCCGTCTGCAGCGCCGTATAGCCgACAAGCCATGGACACATTGCCACAGATTAATGTAAACGACGTCAGTAGCCTGGACTGTGATAACGTGGAGGTTGCAGCAGATGACCATTTAAGAAATTTGAAGGCTTTGGCTGAGAGACTAAGACTACAGACCAGGAGACCCTCCTATCAAGAGTGGAAGGCCCAGGTAGAAGCTACCAGTGCCAAAGGACCATCAGACCCAACAAAGTCCACTGTGTTAGGTCAAGATACAGAACAGGAACACACAGACAGGCCCGAAAGAAGTGACCACAAGTTGGACTTAACACAAGAATGCAGCCTGACTTCAAGAAACCTGAAAGGGTTTGGGAATATTGATGAGGCTCTGATCTGGCTGAGGAAAGAACTGAAGGAGATGCGTTTGCAGGACCAGCAGCTTGCCCGCCAGCTCATGCGCCTGCGAGGAGATATCAACAAACTGAAGATCGAGCAGACGTGCCACCTGCACCGACGGATGCTCAATGATGCCACGTTTGGCCTGGAGGAGCACGACGAGCTCTCTGATCTTCTGTGTGATAGTCCTGTTACACCTGGGTTTGGTCTGTCAGCACCTCTCCGCCTGATTGGTGTCACTAAGATGAACATAAACACAAGACGCTTCTCCCTCTGCTAACCCAACAGTAACAGAGTTTATAAGTCACGCGCATCATGTCTTCAGTGTAAAAACAAGGATCttatatgaaaatgtatataGTGAAAAATATTTTGCGACATATTTTGTAACGAAACATGAAACTGGTAGCAGTAATGATGCGCTCACCAAGTAATTTGCTTTTACTGCTTTCATTGCTTTCTGCACTGTATACAGTAtgctgtattatttttaattacacatcAAGCCTTAtaagctcatttaaaaaaaatacttggaCAGTTAAGGCACACAGAATGTGGAGAAAGTATGCTTTAAaaattcttcttcattttgtatTGGTTTGTACATACGTGAACAAAATTTTCTACAGACATAATTATAGCAGAGACAGGAAAAGTAATCTCAAATACAAGAACGAATGCAATGTGCCAGCTTGACTTCATGTGCATGAAGcttatatttcagttttcatttcaatAAAATGTACTCAGATTTGTACATATGGCAAAGTATCTCAAATCAGGACCTCAGTAATTTATCAGTGGGACAGTTTGAATttcataatataaattattttgtttttaacattaaGATCAAGAAGAACATTTTCTATCTGCTCTGTATCTGATAAAGCGTTGACACTGAAAGCTTGGGTATAAAACACAGTGTATTGCTTTGATGACAGTTTTCAAAGTTTTGCATCTACTACtattactttcttttttgtgtCCTAGTTTTAGTGTGCAGGACAAGAGATTCTGGATTAATTTGAACATTCTCGAAGTTAAGTAAACCATTTACTCTACAGACGTCCCTCACATTTACTATGGTCTGTACAGAGAACTCACAGATCTCTTGGCACATATCcaaatgaggaataaaacatgatggggaatgttgttataggaaaataatcatagaTAGGatctaacagcatgtccagaggtcttttattcctcttataacccAGCAATTTGCTAACGAATACAactgttaatgtattaatgaaagACATGCTGagttttttaactttataagTTGTgcttaatgctgtggaatgtccttGAGACAGCTTCCtgttaacagctataaacagttgatCCCCCACTAGCCTCTTATTTTCCTTTATCTTGAACTTAATAATGCagcttatgttactgagaaaccataaa

Function

symbol description
fam167a Orthologous to human FAM167A (family with sequence similarity 167 member A).

NR:

description
protein FAM167A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944595.2 True 2217 mRNA 0.40 3 6905526 6911188
XM_026944596.2 False 1901 mRNA 0.40 3 6905521 6911188

Neighbor

gene id symbol gene type direction distance location
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 12168 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 37490 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 56988 6833386 ~ 6848533 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 98180 6797339 ~ 6807341 (+)
LOC113545329 LOC108257524 coding upstream 205704 6691634 ~ 6699817 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 75921 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 112819 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 142770 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 184953 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 207503 7118691 ~ 7147134 (+)
G291037 NA non-coding upstream 70823 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 178007 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 482555 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 562981 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 667605 6237714 ~ 6237916 (+)
LOC117599731 NA non-coding downstream 19181 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 28003 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 70775 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 147195 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 309118 7220306 ~ 7227227 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 745481 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1103828 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1926121 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2295920 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2567222 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 101554 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 866409 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1132198 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1577459 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2082325 8993513 ~ 8996996 (+)

Expression


Co-expression Network