fndc4a (fndc4,LOC107589087,LOC107723530,LOC106923250)


Basic Information

Item Value
gene id fndc4a
gene name fndc4,LOC107589087,LOC107723530,LOC106923250
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7118691 ~ 7147134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944600.2
ACTGGTGGTGAGTTAAAGCCTGGCTGCACTATGACGTATGGCGCAAACGTCATAGcgcaacatcttaaccactaaAGCAGGATGCATTCAGAAATAAAGAAGGTCGGgctgttttttggggtttttttgcaCATTGAGCCAAAGCGCGTGAGCGGGTGAAGAGTTAACGTTAGCGCTGCGCGTTGCCTTTACAGATGCACTGCTCACTACACAACTAACACTCTTCAACACCGAGGATGAAGATGAGCCAAACTCTGCGATCTTCATCCTACTTGCTGTAGGATGTATGGGAGAAATCCTGGACCGACTGATATCCTTTCCACGTGAACCTGGAAGAAGCAACAATATACCCCAGCAGTCAAAGCTGTAGAAAATGAGTCAAGACACCTGACATAACGCGACATGGACGTCATCTGGAGCTcgtcaagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgagagagagagagagcatgatcCTGTTGGGGAGATCTGTAAAGTTGACGGACTTGCTTTAATTTTGGGTAATTGCGCCAGGATTCGGTGAACATGGAGCGGATGAAGAAGCGCGCCTGAAGCTGTTTGGAGACTGCGATATCCACAAGAAGAAGCCCGAGCAGCGTGGAGAAATATGGCTCGCCTCTTCCTTCTGCTTAACTCTGTCGCACTGTTGCTTTTTGgcactgacatgtttttggtcGGAGCAAACCGCCCACCTGCTCCAGTCAACGTGTCAGTCATGAATCTGAGAGCtgattcagccacagtgacctGGGAAGTTCCAGAGGGGGACATCATTATTGGCTTCTCAGTCCTACAGCAGAAGCAAGATGGCCACATGCAGCGGTTTATCCGGGAGGTAAACACCACCAGCAGGGCCTGTGTGCTTTGGGACCTGGAGGAGGAAACAGACTACATAGTCCAGGTCCAGTCTATCGGCCTGTATGGAGAAAGTCAGGCCAGCAAGCGTGTCCACTTCAAAACCCTCAAGAAGTCAGACCGCTTCCCTTCCAACAGCTCGAACCAAGaTGACCCAACTGTTGAAGGTCTGGACAAGTCTAGAAACCTGCAAACAGGAGAGATGATCATCATTGTGGTGGTGCTGCTTATGTGGGCAGCGGTCATCGCACTCTTCTGCCGGCAGTATGACATCATCAAGGACAGCgataacagtaacagtaaagaGAAGGTGAAGCCGTTGTCTGAGAGGAGCACACCAGAGCACCACAGTGGAGGACTGCTCAGGAGCAAGTTTCATCAGTCTGTGCCATCTATCAACATCATAGAGGTCTAATCGGACGAGTGAAGATGTTTGCTCTTCCCACTGTCAACATGATGCTACATTGCTGTAAACCTTCTCCACCACAGAGTCAGGATGCCATGTACAAGGAACCGTTATTCACACTGGCTGCCACTGAAGCTAGAACTTTCCATCCCACAACTATGAGCATGCACGCTCAATGTGTCAAAAGCAGTCTATTCCTGTAGGGTAATTGTACATAAAGTGAAGTAGAGCTGTATTAAGGGAGCTCATTCCCACTGGGTTTTATGTTCATTCAGTGTGATTACAGTGCACACTTTTCATTCTGGGATCACGTGATTACATTGTGTTTCTAATATGGTACTGTGTGGTCCTGTGAAAGGCTACTGTAGAAGAACAGGGTTTTTAATGGTTccacgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgaaCACCCGGTCACAGCCCCTGAAACTGCTGAATGAAGCCAAGTGTGCACTCTGGCACATAATTAACGTAAGCTCTTGTGCCATCATGGCCAAAAATGTTCCTAAAACAAGTTTTCTTAGAAAATACTTATACAATAGAAAGATTAGAAGGCCGTGTCACTGTTGGATATATGATGAATGCACTTTTGATTTGAGTACACCAGAACtgattaaaacttttaaaaaaaaatgctttgtttGCACTATAAGTATATATGGATAGTTTGggtaacattttacattaaggCATCCTTAACTATCATCATTTTAGCTTTAGTTAACACACCATAAACTTTGCATTATTATACCATAAgtaatgttaaatatgtaattaatgcctttttaaaaataacgaaccaaataaaccaaataattaatattttcattatgaaatgtttatttcatctgTACATATAAATATGTGTCAATACAGATCAATATGAATAAAGCCTGTATTAATATTTGCAgtggttaatattaatatttgcagTGTGATAAAATTCATAAGTATTGCTGAATGGTGAAGTCCAGTATTTACATCTGGAGACCTGAGTTcagttgattattattttagtaaaatgctgtaatttCATTTATGGTCATTTTTTGTGGACTTACTATATTATTTTTAGTCTTGAATGAAATAATGCAGGTGTATttagttaaaattaaaaa
>XM_034313491.1
ACTGGTGGTGAGTTAAAGCCTGGCTGCACTATGACGTATGGCGCAAACGTCATAGcgcaacatcttaaccactaaAGCAGGATGCATTCAGAAATAAAGAAGGTCGGgctgttttttggggtttttttgcaCATTGAGCCAAAGCGCGTGAGCGGGTGAAGAGTTAACGTTAGCGCTGCGCGTTGCCTTTACAGATGCACTGCTCACTACACAACTAACACTCTTCAACACCGAGGATGAAGATGAGCCAAACTCTGCGATCTTCATCCTACTTGCTGTAGGATGTATGGGAGAAATCCTGGACCGACTGATATCCTTTCCACGTGAACCTGGAAGAAGCAACAATATACCCCAGCAGTCAAAGCTGTAGAAAATGAGTCAAGACACCTGACATAACGCGACATGGACGTCATCTGGAGCTcgtcaagtgtgtGATTCGGTGAACATGGAGCGGATGAAGAAGCGCGCCTGAAGCTGTTTGGAGACTGCGATATCCACAAGAAGAAGCCCGAGCAGCGTGGAGAAATATGGCTCGCCTCTTCCTTCTGCTTAACTCTGTCGCACTGTTGCTTTTTGgcactgacatgtttttggtcGGAGCAAACCGCCCACCTGCTCCAGTCAACGTGTCAGTCATGAATCTGAGAGCtgattcagccacagtgacctGGGAAGTTCCAGAGGGGGACATCATTATTGGCTTCTCAGTCCTACAGCAGAAGCAAGATGGCCACATGCAGCGGTTTATCCGGGAGGTAAACACCACCAGCAGGGCCTGTGTGCTTTGGGACCTGGAGGAGGAAACAGACTACATAGTCCAGGTCCAGTCTATCGGCCTGTATGGAGAAAGTCAGGCCAGCAAGCGTGTCCACTTCAAAACCCTCAAGAAGTCAGACCGCTTCCCTTCCAACAGCTCGAACCAAGaTGACCCAACTGTTGAAGGTCTGGACAAGTCTAGAAACCTGCAAACAGGAGAGATGATCATCATTGTGGTGGTGCTGCTTATGTGGGCAGCGGTCATCGCACTCTTCTGCCGGCAGTATGACATCATCAAGGACAGCgataacagtaacagtaaagaGAAGGTGAAGCCGTTGTCTGAGAGGAGCACACCAGAGCACCACAGTGGAGGACTGCTCAGGAGCAAGTTTCATCAGTCTGTGCCATCTATCAACATCATAGAGGTCTAATCGGACGAGTGAAGATGTTTGCTCTTCCCACTGTCAACATGATGCTACATTGCTGTAAACCTTCTCCACCACAGAGTCAGGATGCCATGTACAAGGAACCGTTATTCACACTGGCTGCCACTGAAGCTAGAACTTTCCATCCCACAACTATGAGCATGCACGCTCAATGTGTCAAAAGCAGTCTATTCCTGTAGGGTAATTGTACATAAAGTGAAGTAGAGCTGTATTAAGGGAGCTCATTCCCACTGGGTTTTATGTTCATTCAGTGTGATTACAGTGCACACTTTTCATTCTGGGATCACGTGATTACATTGTGTTTCTAATATGGTACTGTGTGGTCCTGTGAAAGGCTACTGTAGAAGAACAGGGTTTTTAATGGTTccacgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgaaCACCCGGTCACAGCCCCTGAAACTGCTGAATGAAGCCAAGTGTGCACTCTGGCACATAATTAACGTAAGCTCTTGTGCCATCATGGCCAAAAATGTTCCTAAAACAAGTTTTCTTAGAAAATACTTATACAATAGAAAGATTAGAAGGCCGTGTCACTGTTGGATATATGATGAATGCACTTTTGATTTGAGTACACCAGAACtgattaaaacttttaaaaaaaaatgctttgtttGCACTATAAGTATATATGGATAGTTTGggtaacattttacattaaggCATCCTTAACTATCATCATTTTAGCTTTAGTTAACACACCATAAACTTTGCATTATTATACCATAAgtaatgttaaatatgtaattaatgcctttttaaaaataacgaaccaaataaaccaaataattaatattttcattatgaaatgtttatttcatctgTACATATAAATATGTGTCAATACAGATCAATATGAATAAAGCCTGTATTAATATTTGCAgtggttaatattaatatttgcagTGTGATAAAATTCATAAGTATTGCTGAATGGTGAAGTCCAGTATTTACATCTGGAGACCTGAGTTcagttgattattattttagtaaaatgctgtaatttCATTTATGGTCATTTTTTGTGGACTTACTATATTATTTTTAGTCTTGAATGAAATAATGCAGGTGTATttagttaaaattaaaaa
>XM_034313492.1
GGAGAAATATGGCTCGCCTCTTCCTTCTGCTTAACTCTGTCGCACTGTTGCTTTTTGgcactgacatgtttttggtcGGAGCAAGAATTTGCCTTTTGTGAGACTAATTAGCTTGTCAATTGCCTGCTAAATCATGATCGAGCACCTAGGCTCGAAGCTGgaaatgaagagaaaacacGAATCACTGCACAGGATACAGTGTCCAGAATTCAATCAAGCTCAATCACAGAATGCAATTCAACAAAATGCAACCGCCCACCTGCTCCAGTCAACGTGTCAGTCATGAATCTGAGAGCtgattcagccacagtgacctGGGAAGTTCCAGAGGGGGACATCATTATTGGCTTCTCAGTCCTACAGCAGAAGCAAGATGGCCACATGCAGCGGTTTATCCGGGAGGTAAACACCACCAGCAGGGCCTGTGTGCTTTGGGACCTGGAGGAGGAAACAGACTACATAGTCCAGGTCCAGTCTATCGGCCTGTATGGAGAAAGTCAGGCCAGCAAGCGTGTCCACTTCAAAACCCTCAAGAAGTCAGACCGCTTCCCTTCCAACAGCTCGAACCAAGaTGACCCAACTGTTGAAGGTCTGGACAAGTCTAGAAACCTGCAAACAGGAGAGATGATCATCATTGTGGTGGTGCTGCTTATGTGGGCAGCGGTCATCGCACTCTTCTGCCGGCAGTATGACATCATCAAGGACAGCgataacagtaacagtaaagaGAAGGTGAAGCCGTTGTCTGAGAGGAGCACACCAGAGCACCACAGTGGAGGACTGCTCAGGAGCAAGTTTCATCAGTCTGTGCCATCTATCAACATCATAGAGGTCTAATCGGACGAGTGAAGATGTTTGCTCTTCCCACTGTCAACATGATGCTACATTGCTGTAAACCTTCTCCACCACAGAGTCAGGATGCCATGTACAAGGAACCGTTATTCACACTGGCTGCCACTGAAGCTAGAACTTTCCATCCCACAACTATGAGCATGCACGCTCAATGTGTCAAAAGCAGTCTATTCCTGTAGGGTAATTGTACATAAAGTGAAGTAGAGCTGTATTAAGGGAGCTCATTCCCACTGGGTTTTATGTTCATTCAGTGTGATTACAGTGCACACTTTTCATTCTGGGATCACGTGATTACATTGTGTTTCTAATATGGTACTGTGTGGTCCTGTGAAAGGCTACTGTAGAAGAACAGGGTTTTTAATGGTTccacgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgaaCACCCGGTCACAGCCCCTGAAACTGCTGAATGAAGCCAAGTGTGCACTCTGGCACATAATTAACGTAAGCTCTTGTGCCATCATGGCCAAAAATGTTCCTAAAACAAGTTTTCTTAGAAAATACTTATACAATAGAAAGATTAGAAGGCCGTGTCACTGTTGGATATATGATGAATGCACTTTTGATTTGAGTACACCAGAACtgattaaaacttttaaaaaaaaatgctttgtttGCACTATAAGTATATATGGATAGTTTGggtaacattttacattaaggCATCCTTAACTATCATCATTTTAGCTTTAGTTAACACACCATAAACTTTGCATTATTATACCATAAgtaatgttaaatatgtaattaatgcctttttaaaaataacgaaccaaataaaccaaataattaatattttcattatgaaatgtttatttcatctgTACATATAAATATGTGTCAATACAGATCAATATGAATAAAGCCTGTATTAATATTTGCAgtggttaatattaatatttgcagTGTGATAAAATTCATAAGTATTGCTGAATGGTGAAGTCCAGTATTTACATCTGGAGACCTGAGTTcagttgattattattttagtaaaatgctgtaatttCATTTATGGTCATTTTTTGTGGACTTACTATATTATTTTTAGTCTTGAATGAAATAATGCAGGTGTATttagttaaaattaaaaa

Function

symbol description
fndc4 Involved in response to transforming growth factor beta. Predicted to be located in endoplasmic reticulum and extracellular space. Predicted to be active in extracellular region and plasma membrane.

NR:

description
fibronectin type III domain-containing protein 4-like

GO: NA

KEGG:

id description
K24486 FNDC4_5; fibronectin type III domain-containing protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944600.2 True 2461 mRNA 0.43 6 7118691 7147134
XM_034313491.1 False 2355 mRNA 0.43 7 7118691 7147134
XM_034313492.1 False 2002 mRNA 0.41 7 7119316 7147134

Neighbor

gene id symbol gene type direction distance location
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 12675 7096141 ~ 7106016 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 61064 7053958 ~ 7057627 (+)
pinx1 LOC107589051 coding upstream 69358 7024007 ~ 7049333 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 115061 6987109 ~ 7003630 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 207503 6905521 ~ 6911188 (+)
znf513a LOC108257870 coding downstream 61553 7208687 ~ 7219656 (+)
atraid atraid coding downstream 99038 7246172 ~ 7249822 (+)
nme6 nme6 coding downstream 116792 7263926 ~ 7276146 (+)
si:ch211-142k18.1 LOC108257612 coding downstream 191945 7339079 ~ 7344915 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 201021 7348155 ~ 7356914 (+)
G291109 NA non-coding upstream 60108 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 135887 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 179072 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 184831 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 283993 6834407 ~ 6834698 (+)
G291274 snx17,LOC107746210 non-coding downstream 73172 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 113916 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 257294 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 342174 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 374790 7521924 ~ 7522123 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 99005 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 958651 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1316998 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2139291 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2509090 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 630463 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 896252 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1341513 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1846379 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1926894 9074028 ~ 9179173 (+)

Expression


Co-expression Network