LOC113545311 (LOC108257966,LOC108415675)


Basic Information

Item Value
gene id LOC113545311
gene name LOC108257966,LOC108415675
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4847581 ~ 4854725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944603.2
ATGGCTCGGCGTGTTGCTGTGATCGGAGGAGGAAGCTCTGGACTGACCTGCATTAAGTGCTGCTTGGATGAAGGTCTGGAGCCAGTGTGCTTCGAAAGCAGTGATGACATTGGAGGACTCTGGAGGTTTAAGGAGAATCCTGAGACAGACAGGGCCAGCATCTATCATTCAGTGATCATCAACACCTCAAAGGAGATGATGTGTTTCAGCGATTTCCCCATTCCAGCTCATTTCCCAAACTACATGCACCATACTTATATTATGGACTACTTTCGCATGTATGCTGACCACTTCCAGCTCAAGCGCTATATCCGCTTGCAGaCAAAAGTACTTAACGTCAGCCCAAGACCAGATTTTGCTCAGTCAGGTCAGTGGGACATTGAGACAGAGGACAGGgatgggaagagagagaaacatgtgTTTGATGCTGTGCTTGTCTGCACTGGACACCATTGCCACCCTCAACTTCCTGTGAAAGACTTCCCAGGGATAGAGACATTCAAGGGGAAATACTTCCACAGCCGTGACTACAAGACTCAAGATGAATGGCGGAACAAGAGAGTGGTCGTGATTGGAATTGGTAATTCAGGAGGTGACATTGCTGTGGAGCTCAGCAGGGTGACCAAACAGGTTTTCCTGAGCACTAGGAGAGGCTCTTGGATCCTGAATCGTGTAGGAACCAATGGTATTCCAGGTGATATGATTTTTAACAGGGTATTTCGAATGGCCCAGTGTATTCTGCCCTTTGGATTCTTATGCAACGTGGCAGAGAAGAGGCTCAATGAAAGGTTTAACCATGCAATGTATGGGCTGAAGCCAAAGCACAGATTGCTCAGCCAGCACCCCATGGTAAATGATGAGCTGCCAAATCGGCTCATTTCTGGCACCATCAGGGTGAAGCCAAATGTGCGTGAATTCCGTGGCTCCAGTGTCATCTTTGAGGATGGCACTGTTGAGGACGACATTGACCTGGTGGTGTTTGCCACAGGCTACACCTTCTCTTTCCCCTTCCTGCAAAGCGATGTGATCTCAGTCACAGAGAACAAGACATGCCTGTATAAGTATATGTTCCCTCCAGGCCTTGAGAGACCCACACTGGCTATCATTGGCCTCATCCAACCTTTGGGAGCCATCATGCCCATCTCTGAGATGCAGGCTCGCTGGGCCACGCGTGTCTTCAAAGGGCTTAGTAAGCTTCCGTCAATGAGCAGCATGCTGAAAGACATTAAAGCGAAGGAGGACCGTATGGCTAAGAGGTACGTAACCTCCCAGAGACATACCATTCAAGTAGATTACCTCCCCTACATGGATGAGCTGGCCATGCAAGTGGGTGTCCGTCCCAACCTCCTATGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCAGCACCCCGTACCAGTTTCGTCTGTGTGGGCCGGGCCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAATGGGAGCGTGTAGCCCAGCCATTCAAGACACGCAGTGTCCCTGTGCAGAAGTCAAGTCAATCCCATCTCCCTCTCCTACTGTCTGTGTCTGCTGCTGCTCTACTGTCGACTGCCTACTTCACCAGGGCCAACCTTACTAGTTTCCTCCCAGACATCACATCCTTTCTGGAGAGGCTAAAATCTCATCTGCCTCTGCCTGTGGTGAGGCAGTGACCACTAATGCAGTGATTTATTTCATAACAGCACAGACAGGAGTTTATTCTCCTGCAAGCGTCATACATGGAGAAGGGCTAAGAGATACTTTATGAGTAAGAAAATGACATGAAAGTGaagttatttttaacatttcctgTTAAACCTTTAAAGCCTCAACAATAGCATCATGAAATACTTGCTATCTAATGATTCTCATTCTAAACATCTAAATACACATATTCTACTCCACTGGAGACCAGTGCTATTGTTTGCAAACAGACTTAAAAACACACTATAGTGGTACTTTATATGCCTTACATTCAAAGCTGCAGGTGCTAATTTTGGAAATGTAACCAAACCTTTATATAATTTTAGATAATTTGGTAATATGTACCAAAATGGTCTGTCTTGTGGCttttattgaaataaacatgCAACTTGTTTTCTACTTTGAATACCAGATAAGTTGACTTTCTCACATGGTTATGCATATCATTAacacttaaaataataaaataataataataaaatgataatataaaataatcattttcgttttaatgatgaaatataagtttatttaattttttttcattttgcatcaCTTCCTGCACATTGCAACAAGTACATTATGATGCTTTATATTTTCactaaatgctttatttttattgcctTTATTGTAGTTTTCCTTTGATATGTTGAACATCTTAATTGTCTAAATTCTGAATGAATTACAGTACATGAGTACATGCAGATATTTCTGTGAAACTTGACTATGAATCCTGTAAAACTTCATTAAATGTTCATTAATTCTAATgccattttttcattaaataatttttgatGATGCA
>XM_034313918.1
TTGGCAGTCTAGGAAGTCTGAGAAAAACAGCAGAAGTTCCTGTATAATTTTTGGAGCTTAGTTTGTATCGTAATCTCGTCAGCAAGAAGATGGCTCGGCGTGTTGCTGTGATCGGAGGAGGAAGCTCTGGACTGACCTGCATTAAGTGCTGCTTGGATGAAGGTCTGGAGCCAGTGTGCTTCGAAAGCAGTGATGACATTGGAGGACTCTGGAGGTTTAAGGAGAATCCTGAGACAGACAGGGCCAGCATCTATCATTCAGTGATCATCAACACCTCAAAGGAGATGATGTGTTTCAGCGATTTCCCCATTCCAGCTCATTTCCCAAACTACATGCACCATACTTATATTATGGACTACTTTCGCATGTATGCTGACCACTTCCAGCTCAAGCGCTATATCCGCTTGCAGaCAAAAGTACTTAACGTCAGCCCAAGACCAGATTTTGCTCAGTCAGGTCAGTGGGACATTGAGACAGAGGACAGGgatgggaagagagagaaacatgtgTTTGATGCTGTGCTTGTCTGCACTGGACACCATTGCCACCCTCAACTTCCTGTGAAAGACTTCCCAGGGATAGAGACATTCAAGGGGAAATACTTCCACAGCCGTGACTACAAGACTCAAGATGAATGGCGGAACAAGAGAGTGGTCGTGATTGGAATTGGTAATTCAGGAGGTGACATTGCTGTGGAGCTCAGCAGGGTGACCAAACAGGTTTTCCTGAGCACTAGGAGAGGCTCTTGGATCCTGAATCGTGTAGGAACCAATGGTATTCCAGGTGATATGATTTTTAACAGGGTATTTCGAATGGCCCAGTGTATTCTGCCCTTTGGATTCTTATGCAACGTGGCAGAGAAGAGGCTCAATGAAAGGTTTAACCATGCAATGTATGGGCTGAAGCCAAAGCACAGATTGCTCAGCCAGCACCCCATGGTAAATGATGAGCTGCCAAATCGGCTCATTTCTGGCACCATCAGGGTGAAGCCAAATGTGCGTGAATTCCGTGGCTCCAGTGTCATCTTTGAGGATGGCACTGTTGAGGACGACATTGACCTGGTGGTGTTTGCCACAGGCTACACCTTCTCTTTCCCCTTCCTGCAAAGCGATGTGATCTCAGTCACAGAGAACAAGACATGCCTGTATAAGTATATGTTCCCTCCAGGCCTTGAGAGACCCACACTGGCTATCATTGGCCTCATCCAACCTTTGGGAGCCATCATGCCCATCTCTGAGATGCAGGCTCGCTGGGCCACGCGTGTCTTCAAAGGGCTTAGTAAGCTTCCGTCAATGAGCAGCATGCTGAAAGACATTAAAGCGAAGGAGGACCGTATGGCTAAGAGGTACGTAACCTCCCAGAGACATACCATTCAAGTAGATTACCTCCCCTACATGGATGAGCTGGCCATGCAAGTGGGTGTCCGTCCCAACCTCCTATGGCTGTTCCTGACTGACCCTGGTTTGGGTTTGAGGGTTCTGTTCGGTCCCAGCACCCCGTACCAGTTTCGTCTGTGTGGGCCGGGCCAGTGGGACGGGGCTCGTCAGGCCATCTTCACCCAATGGGAGCGTGTAGCCCAGCCATTCAAGACACGCAGTGTCCCTGTGCAGAAGTCAAGTCAATCCCATCTCCCTCTCCTACTGTCTGTGTCTGCTGCTGCTCTACTGTCGACTGCCTACTTCACCAGGGCCAACCTTACTAGTTTCCTCCCAGACATCACATCCTTTCTGGAGAGGCTAAAATCTCATCTGCCTCTGCCTGTGGTGAGGCAGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944603.2 True 2519 mRNA 0.43 8 4848284 4854725
XM_034313918.1 False 1775 mRNA 0.50 9 4847581 4853892

Neighbor

gene id symbol gene type direction distance location
LOC117599802 LOC108257967 coding upstream 1547 4835086 ~ 4846034 (+)
LOC113545285 LOC108257967 coding upstream 15637 4823038 ~ 4831944 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding upstream 25570 4816687 ~ 4822011 (+)
LOC117599796 NA coding upstream 205225 4641793 ~ 4642356 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 265800 4561161 ~ 4581781 (+)
prrc2c prrc2c,LOC107712868 coding downstream 4598 4859323 ~ 4886501 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding downstream 77764 4932489 ~ 4939511 (+)
suco suco,LOC107712873,LOC107687343 coding downstream 143423 4998148 ~ 5048442 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding downstream 197305 5052030 ~ 5064149 (+)
mysm1 mysm1 coding downstream 211585 5066310 ~ 5077918 (+)
G290009 NA non-coding upstream 32785 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 41001 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 44553 4802813 ~ 4803028 (+)
G289995 NA non-coding upstream 91846 4755506 ~ 4755735 (+)
G289989 NA non-coding upstream 116269 4731085 ~ 4731312 (+)
G290028 NA non-coding downstream 41397 4896122 ~ 4896387 (+)
G290030 NA non-coding downstream 44242 4898967 ~ 4907812 (+)
LOC117599804 NA non-coding downstream 292460 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 398792 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 447905 5302630 ~ 5306902 (+)
LOC113545190 NA other upstream 237980 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 509282 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 537652 4248330 ~ 4309929 (+)
G289531 NA other upstream 777214 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 859458 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 87226 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 880748 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1281195 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2158017 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2922872 7777597 ~ 7782008 (+)

Expression


Co-expression Network