si:ch211-142k18.1 (LOC108257612)


Basic Information

Item Value
gene id si:ch211-142k18.1
gene name LOC108257612
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7339079 ~ 7344915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944605.2
ttttaTACTGTCTTCCTCTCTCGACTGCAAAAGTAGTTACCAAACAGTAGTTACCAGGCAGGGTTAAAGAATTTTGAGCTTCCAAGCTACTCTACAGACTTTTATGTTGGAACAAGAGCAATGAAGTCACTGATGGATTGATTTTTTGTGTGCTACCTTTCAGCCCCTGAAGAATCTGGTCTTATTGGCTGAAATTGGGCCAGAATGGAGCAGCGCTGGACGCTGTGTGCATTGCTATTCATAGCAACACTGATACTAGGCCACTGCCAGAGTGGTGATGGAGGGGACTGGGGATCAGGCAATATGCCAGAGCTTTTGTTCACTACTACCGCAACTCCTATTCCAAACACAGTCTATAATGATCCAGCCAACCCTGGGAGCACAGACTGGACCAAGCCGCTTTTTCAAGTCATTCCAGACAGCAAAGCTGATGGCTGCTCGGTCAATTTCCACACCAGCCAGGCTATGTCCAGGCGATTACAAGTGGCCAAGGAGGAGATGGCTTATTTGAAAGCCCTCCAGCATGGGAATCAGGCAGTGATGGAGAATCTGATCCAGTTTGTTGGAGCAGAAATGGGGGATCAGAGCTATCAAGAGATTATACAAGAAAATATTGCTGCTATCAAGGAGAATCATGCAAGTTGTGTGGGAGTGTTGAAAAAGGCAACTGAGGAGTTGGAGGACCAGTTAGAAGGTGCTGATTTTGCTGGAATTCAGAAAATCAGTGAAGAGTCTTTGACCTTTGAAGGGATGCTGCACGCGCTACAACAAACCTCGCCAACCAACTGGAGACCTCCTCACGGACCCTTCACCTCCGGATAACAGAGCAGCTGAGAAAGAGCTTAAAACTAAAAAGGACATAAACCCCATAAAGGGAAGACTATCATGCTTGTGAAATGTGACACCCTCAAATGGCATGAAGACAAAAGGAATTAAGAggataatttaatatttaagtgaTTTTCAAAGATGtgataattaaataatcagaaaatcACTTCATTATACTCTAGgttaaaagtttaaagttttgCACAAGTTTTAAATTTGTGAATTAAAATGGtctacataaaaaagaaaaaaatcttggaAGAATAGTGACATCTAGTACAATTATTTTTGAATTCCAGGCAGCTAGCTAAGTGTTATTGCTTTCTTGGTGCTAGGGTGCAGCTGGAGAGTGGACAGCATGGGCCCCTCAGTCAGTGCAGATATATGTGTGCtgggaggagaaaaagagaaatgacagtGAGGTCATAGAAAAACAAATGGAGCCTCATCTGGCAGCCAAAGCAGAAGGGTGTTTGTTATCACAATTGTTTAATTCCTCTCAATTAATCATAACGAAACACTGTGTAAAGTATGATTTATGTTGACCAGCTGTAAATGGGCTGTGTGCAGAATGTATATGTGCATAGTTGAAGGATAAAAGTGCTTGGATGCCCTGTAGAGTATGCATACTTTCATGCATACTTATGCATATTTAGATGCTTTGGGACATTATTTAACTAATATAGGCATATTCATCTGTACAgaataaagtgctaatttaaccTCA

Function

NR:

description
uncharacterized protein LOC110522646

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944605.2 True 1558 mRNA 0.41 3 7339079 7344915

Neighbor

gene id symbol gene type direction distance location
nme6 nme6 coding upstream 62933 7263926 ~ 7276146 (+)
atraid atraid coding upstream 89257 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 119423 7208687 ~ 7219656 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 191945 7118691 ~ 7147134 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 233063 7096141 ~ 7106016 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 3240 7348155 ~ 7356914 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 133367 7478282 ~ 7502438 (+)
trnac-gca_25 NA coding downstream 244453 7589368 ~ 7589439 (+)
six4b LOC108258176,LOC108434989 coding downstream 278306 7623221 ~ 7629922 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 291270 7636185 ~ 7639104 (+)
G291300 NA non-coding upstream 76968 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 111852 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 280496 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 356275 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 399460 6939191 ~ 6939619 (+)
G291380 NA non-coding downstream 59513 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 144393 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 177009 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 265572 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 320214 7665129 ~ 7666009 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 319393 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1179039 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1537386 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2359679 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2729478 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 432682 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 698471 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1143732 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1648598 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1729113 9074028 ~ 9179173 (+)

Expression


Co-expression Network