fam20b (fam20b,LOC107669149,LOC107658171,LOC107739853)


Basic Information

Item Value
gene id fam20b
gene name fam20b,LOC107669149,LOC107658171,LOC107739853
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4561161 ~ 4581781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944629.2
TGAATGCACTGCAACAGTGTTACTGACATGTtaaatgtcttttcttttctaaatcaGGAAGCTGATGCATGAGAAAGAAATGCATTCCAcgaataaatctttaaaatgagTGCATAACTTTGGGTGCATTCATATATTTCCTAATCATAATCTCGGTTATAGTACAGGTTCACTTTAAGCAGAAAGGTGACGCGTACCTCGCTTGAatggtgtatacacacacacacacacacaagcacaagaCGGACATGATGGGACGCGTTTGCACAGCGGATTAATCAGCTGCATTAAACCCCAACAGCGTTATATTTGTGTAGAAAAGCGaggagaaaaaaaagggtgcGCAAGATAGAGGCATCAGTCACATACTATTGAGTGAAGGACCTTTTTTCCGGCCCTCCATCCTCGATCATAAccacagaagaaaacaaatattctAAAGCagCGCCTCCTTTTTCCGCTGTGAGTGTTCTCTCTGGAGGTGCACAGTAGTCAGGCTCTGCCATGCCCAGGGCGTGACCCCTCGTgtttccttctcctcctccatcatgaAGCTGAAGCAGcgtgtggtggtgttgtgcggtgtgctgctgctgctgggccTGGCCAAGCTCTTCCTGCTGGATGGAGGCGAAGGCTCGGCTGCCAGCCGCCGTGACCTGCGTGCCTTCCGCAAGATGGAGGCGAGCCTAGCTCTGGCCAAGAACGcccgtctcacacacacgttGCAGTCCCCCTGGGAGGTGGCGTCACAGTGGGTGGGGCCACGCGAGGTTTACCCAGATGAGACACCTGAGCTGGCCGCTGTGCTCAGCGCCCTGGCCAGCGCCCGTATCCAGAGGGCCGACGTCGGCTACAAAGGCACCCAGCTGAAGGCACTTTTGGTGCTGGATGGAGGACAGAAGGTGGTGTTCAAGCCCAAGAGGTACAGCAGAGATTATGTGGTTGAGGGAGAGCCTTATGCAGGCTATGACAGACATAATGCAGAGATCGCTGCCTTTCACCTGGATAGGATCCTGGGCTTTAGGAGAGCACCTCTAGTGGTGGGGCGATTTGTGAACCTGCGCACGGAGATAAAGCCTGTTGCCACAGAGCAGCTACTGAGCACATTCCTCATGCACGGGAATAATACCTGCTTCTATGGGAAGTGTTACTACTGCAGGGAGAGTGAGCCTGCATGTGCTGAGGGTGACATAATGGAGGGATCAGTGACACTCTGGCTCCCTGACGTCTGGCCACTGCAGAAACACAGACATCCATGGGGACGCACGTACAGAGAGGGCAAACTTGCCAGGTGGGAATATGATGAGAGTTACTGTGAAGCAGTAAAGAAGATGCCGCCGTACGATGCTGGTCCACGCCTCTTGGACGTGATTGACACGTCTATTTTTGATTACCTAATTGGCAACGCGGATCGGCATCATTATGAGAGTTTCCAAGACGACGGCGGAGCCAGCATGCTCATTCTACTGGACAATGCTAAAagTTTCGGGAACCCAGCTTTAGATGAACGAAGCATTCTGGCTCCTCTTTATCAGTGCTGCATGGTACGTGTGTCCACCTGGAACCGATTAAACCTGCTGAAGGGCGGAGCTCTGAGTTCAGCGATGCGCCAGGCTACAGCCCACGACCCTGCCCACCCAGTTCTGACTGAGCCTCACCTCGCAGCCCTCGACCGCCGTCTCAGCAGCGTCATAGCCAACATACGCCAGTGCATAGAGATGCAGGGAGCAGAGAGCACACTTATTGAAGACCGCATGAACCTGCCTCACCCTTAAACACatccaagagagagagaaagagagagggaggtagCATTTTAAATTGAGTTGAATGCTGCCTGTCTGCCTTTAGAGGCTCACTTCCTGCATTTGCAGCATTGCAAGGAGACCTTAAAAACTGTTGGAAGTTACCTCAACCCAAGCAGGAAGTTGTCTCATAACTCATTAACATTGATGCAGACCCTAGTTTCTCCACAaaccaaaaatgttattttctcgagcacagccacacacacacacacacacacacacacacacacacacacactaatctttTTCTCTTCCATATTTTCCCAACATGCATCACACAGTAGGAATAAGTTCACCAATTCCCTTGCAACATTCTTACTTGGCCATGTAATATTTCTTTCcataaatttctctctctctccatgtttaAAAGTGGCCTGTAACGTTGAACATGCCTGAGCCTGTATGGGCTCAGGGACATTCCACAGCAGCTGTGGGGGTGTTCGCAGGCCCGGGCTGCCCCGTACTGGTATCAAGGGCAGCACCAGTGAAATTATGTCACTGACATCACAAATCAAAGCATTAACAGCCTATCTGGGGATAGCCTGTCTACAAACAGATTGTACATAAGCAACTATTTAATGACAATGttgataaacaaatgaatggttttaatgatttaaaagattaatattgAGAGTTACTATGCAGGTTTGcctgttttaaaatgtgcagtATGATTTCTGGATATAAACGGGTAGTGGGTGGAAGAAGCTGCTACTGAAGCTCAAAAAGAAGATGGAGTGAATGATAGCATGAAAAGCTATAAGAGAGAGATATTCACACTTATTCACAAAGCAGTGGTGTGGCTACATGTATTCATCCCAGCCAAATAGGAGTCATTTAAAGAGCAAGAGCATCTAATTAAACAAGGGAAATCTGGTGTATTTCTGTATGTTTGGACTGAAAGGCTACTGCCAGATCAACCATTTCCTGATAAGATTGAGGGTCCCTGCTGTGTGAAGATCttttgaacattaaaaaaaccttaaaattcA

Function

symbol description
fam20b Predicted to enable phosphotransferase activity, alcohol group as acceptor. Acts upstream of or within embryonic cranial skeleton morphogenesis and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to colocalize with Golgi apparatus. Is expressed in brain; ceratohyal cartilage; ethmoid cartilage; palatoquadrate cartilage; and pectoral fin cartilage. Orthologous to human FAM20B (FAM20B glycosaminoglycan xylosylkinase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K20825 FAM20B; glycosaminoglycan xylosylkinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944629.2 True 2809 mRNA 0.48 9 4561161 4581781

Neighbor

gene id symbol gene type direction distance location
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 3674 4453316 ~ 4557487 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 110239 4447647 ~ 4450922 (+)
echdc2 echdc2,LOC107669145 coding upstream 128806 4425634 ~ 4432355 (+)
LOC113545214 LOC108257527 coding upstream 141328 4407768 ~ 4419833 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding upstream 165041 4366765 ~ 4396120 (+)
LOC117599796 NA coding downstream 60012 4641793 ~ 4642356 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 234906 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 241257 4823038 ~ 4831944 (+)
LOC117599802 LOC108257967 coding downstream 253305 4835086 ~ 4846034 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 265800 4847581 ~ 4854725 (+)
G289866 angptl1,angptl1a non-coding upstream 21321 4529928 ~ 4539840 (+)
G289831 NA non-coding upstream 126371 4433235 ~ 4434790 (+)
G289521 NA non-coding upstream 198073 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 208360 4350748 ~ 4352801 (+)
G289615 NA non-coding upstream 226202 4265383 ~ 4334959 (+)
LOC117599674 NA non-coding downstream 42361 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 122881 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 149304 4731085 ~ 4731312 (+)
G289995 NA non-coding downstream 173725 4755506 ~ 4755735 (+)
G290004 NA non-coding downstream 221032 4802813 ~ 4803028 (+)
trnad-guc_17 NA other upstream 222862 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 251232 4248330 ~ 4309929 (+)
G289531 NA other upstream 490794 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 573038 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 578467 3943494 ~ 3982694 (+)
LOC113545190 NA other downstream 19274 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 360170 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1153692 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1554139 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2430961 7012742 ~ 7019686 (+)

Expression


Co-expression Network