LOC113545329 (LOC108257524)


Basic Information

Item Value
gene id LOC113545329
gene name LOC108257524
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6691634 ~ 6699817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944644.2
CATTAGTGTACCATTACAGACCATCAGTGTTACACTACAGAGAGTGAAAACACAGCGCTTTGAGTCAGAACACGCTGTAAAGGCTTGAAACTGTGTGAGCAGGGTGGTGGTACTGAATCAGATGTATGTTAGGGTGGTGTTTTGTTGGAGAAAGCGCAGTTAGACGGATGACTGGGATACAAAGAGCAGCTCCACGCTGCAGCTGCACGCGCTGATGTTCCGCTACTACACTATTTAAGGTTGCGTTAACAAACGGAAGATCTGCTTTATTACACTTCAAGATGTCGCGTCGAAAGCAGACAAAGCCGAGTCCTCTGGAAGATCATGAAATGGACCTTGAAATTTCGAGAATTCCAGCTCCCTACATggaaagagaggaggaagaaagaTTACTGCAGGATGATTGCGAGTATCACAGTGAATCCTCAGAGagagaaaagaagatcACAGTGGAGTCCCAGAAAATCTCTCTGCTGGAGCTCATGAAGAAACAGATCACTGTCAAGAGACAGAGGGATTTCTTGGACAGTGATGAGGAGTCTGTTGTTTCTTATAAACTTTACCAGGAACTTCAGGATAGTTACGTAATACTGAAAAAACGTCTCAGAGAGAAGGACGTGATTATTGCAGAGAAGGACACTGCAATTAGAAAGCTGAGCGAAAAGTGCAGAAGGATGACGGTGGAGCTGGACAAAATCAGACAATTGAATATTTGCCTTCAAgaacaactttttttaaatgaagaagGAACGCAGACACAacacacagtttacacagaaaacacagaatgtTCGTATGAGCCCTATGAAAATGTATTGGTTCCTAATGTGAATGAGCTTAAAGAACCCCCACCTGAGGATCTCTTAGAGAAGGACTTCGGGAGGGTGGACCTAGGACATGGGGTCCTTTTGGACAAACAAAAATGGAAGGCCATCCAAAGAATGGATTCTCATTCTAAGTTTTGTAAGTCATTGGCTGTAGCCATCTGGGGCCTTGAGACGCTAAAGGAGAGGAGTGTGACCGGCTCCAAATCAAATGCCATCAAAGGGTCCGTGGCGAAGCCTCCACTATCACCAGAGAAAGTTGGTGTCATTAGAGAGTGCCTGAAGGACCGACTACAGCAGCGTGGCTATCAGAAGGAGGAAGTTGATGGGCAGCTGCGTTTAGTTCGACGTTTTCTGTCTGAGAAAATCTGCGACATCAAAAGGAAAGTCAGTATAAATTTAGAGGGTACCAGCCCCTCCACTAGTTCACAACTTTCTCAGACCTGAAGATTCGCCACTCGTTTTGCTACTGGGTGCCACAAGATCTACAGCTACAAAGGACTATGAATGACTGTAAAGTGGAACAAACTTTCCTCCATTAGTTAAACAAAGTGCATTTTTAGGTTCAACCCAATTATGGAACAGTTGTATATACTACAGTGTTATTATCAAATGTGATGTAATGCACATTaaaccacaacactgttgaattctcaaacctgA
>XM_034313819.1
ACCATTAGTGTACCATTACAGACCATCAGTGTTACACTACAGAGAGTGAAAACACAGCGCTTTGAGTCAGAACACGCTGTAAAGGCTTGAAACTGTGTGAGCAGGGTGGTGGTACTGAATCAGATGTATGTTAGGGTGGTGTTTTGTTGGAGAAAGCGCAGTTAGACGGATGACTGGGATACAAAGAGCAGCTCCACGCTGCAGCTGCACGCGCTGATGTTCCGCTACTACACTATTTAAGGTTGCGTTAACAAACGGAAGATCTGCTTTATTACACTTCAAGATGTCGCGTCGAAAGCAGACAAAGCCGAGTCCTCTGGAAGATCATGAAATGGACCTTGAAATTTCGAGAATTCCAGCTCCCTACATggaaagagaggaggaagaaagaTTACTGCAGGATGATTGCGAGTATCACAGTGAATCCTCAGAGagagaaaagaagatcACAGTGGAGTCCCAGAAAATCTCTCTGCTGGAGCTCATGAAGAAACAGATCACTGTCAAGAGACAGAGGGATTTCTTGGACAGTGATGAGGAGTCTGTTGTTTCTTATAAACTTTACCAGGAACTTCAGGATAGTTACGTAATACTGAAAAAACGTCTCAGAGAGAAGGACGTGATTATTGCAGAGAAGGACACTGCAATTAGAAAGCTGAGCGAAAAGTGCAGAAGGATGACGGTGGAGCTGGACAAAATCAGACAATTGAATATTTGCCTTCAAgaacaactttttttaaatgaagaagGAACGCAGACACAacacacagtttacacagaaaacacagaatgtTCGTATGAGCCCTATGAAAATGTATTGGTTCCTAATGTGAATGAGCTTAAAGAACCCCCACCTGAGGATCTCTTAGAGAAGGACTTCGGGAGGGTGGACCTAGGACATGGGGTCCTTTTGGACAAACAAAAATGGAAGGCCATCCAAAGAATGGATTCTCATTCTAAGTTTTGTAAGTCATTGGCTGTAGCCATCTGGGGCCTTGAGACGCTAAAGGAGAGGAGTGTGACCGGCTCCAAATCAAATGCCATCAAAGGGTCCGTGGCGAAGCCTCCACTATCACCAGAGAAAGTTGGTGTCATTAGAGAGTGCCTGAAGGACCGACTACAGCAGCGTGGCTATCAGAAGGAGGAAGTTGATGGGCAGCTGCGTTTAGTTCGACGTTTTCTGTCTGAGAAAATCTGCGACATCAAAAGGAAAGGTACCAGCCCCTCCACTAGTTCACAACTTTCTCAGACCTGAAGATTCGCCACTCGTTTTGCTACTGGGTGCCACAAGATCTACAGCTACAAAGGACTATGAATGACTGTAAAGTGGAACAAACTTTCCTCCATTAGTTAAACAAAGTGCATTTTTAGGTTCAACCCAATTATGGAACAGTTGTATATACTACAGTGTTATTATCAAATGTGATGTAATGCACATTaaaccacaacactgttgaattctcaaacctgA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944644.2 True 1487 mRNA 0.44 7 6691636 6699817
XM_034313819.1 False 1471 mRNA 0.44 7 6691634 6699817

Neighbor

gene id symbol gene type direction distance location
taf4b LOC108258144 coding upstream 15280 6661880 ~ 6676354 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding upstream 31050 6640967 ~ 6660584 (+)
aqp4 LOC108257544,LOC108414838 coding upstream 61660 6622927 ~ 6629974 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding upstream 187503 6461728 ~ 6504131 (+)
dsc2l NA coding upstream 461082 6214741 ~ 6230552 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding downstream 97522 6797339 ~ 6807341 (+)
tnfaip2a NA coding downstream 133569 6833386 ~ 6848533 (+)
LOC113545215 NA coding downstream 150539 6850356 ~ 6868031 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding downstream 184486 6884303 ~ 6893353 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding downstream 205704 6905521 ~ 6911188 (+)
G290879 NA non-coding upstream 268668 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 349094 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 453718 6237714 ~ 6237916 (+)
LOC117599801 NA non-coding upstream 872568 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 883718 5807006 ~ 5807916 (+)
G290935 NA non-coding downstream 14110 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 134590 6834407 ~ 6834698 (+)
LOC117599731 NA non-coding downstream 230552 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 239374 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 282146 6981963 ~ 6982804 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 531594 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 889941 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1712234 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2082033 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2353335 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 312925 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1077780 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1343569 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1788830 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2293696 8993513 ~ 8996996 (+)

Expression


Co-expression Network