rd3l (LOC108257848)


Basic Information

Item Value
gene id rd3l
gene name LOC108257848
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7774492 ~ 7776361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944647.2
agagacagaaggcaGTTTGCTGTAGGCAGGGGAAGCAGtcactctgcctctctctcaaCTTTACCGCACACTGCCACCAAAACTGCTATCTCttacactctgtctgtctctaatTCGTTTAGTGTCTTTCCATATATCAGTCTCTCTCACGCGTTTAATCTTTTCACCATTTCAAGGTTTACCATATGGAGTCACGGCATCATGGGTATCGTCCTTTCAATCCAAGTCATGCAAAGCCATTCCTGGCCTGGATGAATTCCTCCCATCGGGAAGCTGAGCAAGGTCCAAACTGTGCGGCCTCCATGGGCCCCAGCCGGGTGTTACTCCAGGAGCTTCTCTGGCAATTCGAGCAGAGAGAGTGTCTGGCTCTGGAGGAAGAGCGCCAACGTTGCTCCCATGGCGCTCTAGGATATCGCCGGCCTCTCACCAGGGACAGCTTGCTTGCCCTAATACCAGCGTCTGAGTGCAGACTGCTAGAACGGCTCTGTGCCCGGAttcctccatcacacacagcCACGGTACTCTTCAGGTTCCGTGAGATTTTGGCTCACAATTATGTCGTTCCCTGGGAGCTCGTGTGCATCTTCAAACAGGTGCTGAGGGACTTCCTGAAAAGGCAGGAAGAGGTGGGCTACAGGAAATCTTTTCCTCCAGCCCCACCAATGCTACTTCCTGTATCTCCTCCTCCTGCAGACATCAACACCCGTGACCAAAAGACTACAAAGTCATCTTCTCTGGAAGGGAAAGAAAAGCATCGGGAGGAGATCCCAACCATATCCAGCTATGTGGACAGGCATTTACATAGTGCTTGTTCCCATACTGTCCAAAGGCACTGTCTTCCCTACTGTCGCTCCTTTCCCTATGACTAGCCTGAGGCCTACAGCGCCAAACTGTGAA

Function

NR:

description
PREDICTED: protein RD3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944647.2 True 897 mRNA 0.52 3 7774492 7776361

Neighbor

gene id symbol gene type direction distance location
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding upstream 6798 7724306 ~ 7767694 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding upstream 135388 7636185 ~ 7639104 (+)
six4b LOC108258176,LOC108434989 coding upstream 144570 7623221 ~ 7629922 (+)
trnac-gca_25 NA coding upstream 185053 7589368 ~ 7589439 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding upstream 272054 7478282 ~ 7502438 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 9061 7785422 ~ 7832026 (+)
trnaa-cgc_5 NA coding downstream 106857 7883218 ~ 7883289 (+)
trnaa-cgc_6 NA coding downstream 108284 7884645 ~ 7884716 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding downstream 109432 7885793 ~ 7945812 (+)
trnaa-ugc_17 NA coding downstream 111167 7887528 ~ 7887599 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 106687 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 108483 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 159512 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 252369 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 253634 7489308 ~ 7520858 (+)
G291644 NA non-coding downstream 56969 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 169591 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 349660 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 532881 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 688476 8464837 ~ 8465037 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 754806 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1614452 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1972799 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2795092 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3164891 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 1236 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 267025 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 712286 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1217152 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1297667 9074028 ~ 9179173 (+)

Expression


Co-expression Network