pinx1 (LOC107589051)


Basic Information

Item Value
gene id pinx1
gene name LOC107589051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7024007 ~ 7049333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944650.2
tagaaatacaaaaaatgttGTTCTTTTAATCAGGCGCGTGAAGGACAGCTTCTCGGATTCGGCCCATGTGTTCCAGGACCCCGAGATGTCCATGCTTGCTGAGCCTCGTCGAAAGCAGAAGTGGTCTGTGGATCCGAGGAACAGCACGTGGAGCAATGATGACTCCAAGTTCGGCCAGAAGATGCTGGAGCGAATGGGCTGGTCTAAAGGGAAGGGTCTTGGCAAAAGTGAACAGGGTGCTACAGAGCACATCAAGGTTAAAGTGAAGAACAACAGCTTGGGTTTAGGCACCACGATCAACAACGAGGATAACTGGATTGCTCATCAGGATGATTTTAATCAGCTTCTTGCTGAACTGAACAACTGCCATGGGCAGAGCAACACTGAAGAGCCGTGCCAAGAACAGACACAAGGCTTCAGTTTGGAGGAGAAATCCAAGACCTCAAAAAAAAGGGTCCATTACATGAAGTTCACCAAAGGAAAGGATCTGTCCAGTCGCAGTGAAACAGACCTCGCTTGCATCTTCGGTAAAAGAGCCAAACAGAGCAATCAGGATGAGCTAAGCAATGGTAGTGACTCTCCGGAGGAGAAGGAGCAGGACAGCGATGACAAGAATGGGCCATCAAACCCCGAGGTGGAACTCAACACAGTGACCAGTGCTCTGACCATGCAGGAGTACTTTGCACAGAGAATGGCTCAGTTAAAGAAAGGTCGTGCTGAGAACCAGTCCTCTGCTTCCACTCCTGAAACCAGCGGCATCCCACAATCTCAGTCAGCGACGCCCAAATCCACCGAGGACTCTCCCGACACCAGCGACATGGAggagagcaaaaaaagaaagaaaaagaagaaaaaggatcGAAAGAATGACCATCACGACGATGAGGAAAAGGTGGAAGAAACTGAGCAAACCCCAGTGACGGAAGAGGTTGCTGTTGTAGAGCAGGCTGTCTCGgacagcaagaagaagaagaaaaagaagaaagaacgACAAGCTAGAGAGGAGGATACAGTGGAGGAGTGCTGCGTCGCAGCAGCTAAACAAGGCACAGCTGGGGAAATAGTGGCCCTTTCTACggagaaaaaggaggaaaaggaaaaacaaagaaacgcCTACTCACACACCTACAGATTCAACTAACGAAGACAATAAAGCAGATATCACAGACACCGAGGTTTtgggtaaaaagaaaaagaagaggaagcaGAGAGATTTAGAGGAAGAGCAGACAGAAGTAGTAGCAGAAAAGAAATCCAAAAAggacaagaaaaagaagaaaaatgacaaTTAGGGCTTTATACGTGGTTGGGTTTAGgtttatctgtatttttttcaataaactGAACgtcagcaatttttttaaagctcattCTGTCCATCATGGGTCTGATTGTATGTCTTACCATGGAAAACCATTTTTATAGCAAAAAATCTCTTCAATTGTATAAAACTATGTATTAGCACATTTTTTATTCGACTATTGTATATGAACATCAAATTACACACTTTGGTCAGCATCACTTAGTGCAATTCGCCTTAAATGTCTCAGTTGCATTTTTGCCCTAAGAGTAATCCCAGATGTTACTCTCAAAAGAAAAACCCATGCAACGTCTGTTAAAGGTTTTTAAACATCATAAATCACTGCCTATGTCTTATTGAATGTCTATAGGCATATGGGAAGAGTGTCATAGCAGTGCAGCAATCTGAATcaattttcagttttctttgtttttaaaatagtcCTGCATCCTCTTTCTTACCATCATAGTTTTCCTCTTCCTGGTATGATGTATGAAGCTGCTGATGGATTGTAGCCCACACTTAAGTGTTTAAAAACATACTTTGCCCATGAAAAGCTGACGAGTAGTCACATTAAAATGTAAGACTGGTGTGTTAAGTGGacatttttttgccttaatgTTGAGACTTGCACCTCATATGGACAGCATAAATTGATGCTAAATTCAGGTGTCTTTCCTTAATTTGACTTTCGAAATGGGACTTTCTTTGAATTGTGTTGAACAATGGTGTTAATGTACTTACATGCTTACTGTTTATAATGTCCAGGCCTGTAAGTAGCTTAACATCACTGCTTTGACCAGTGAAGAAATGGGTCAGTGATGGGACTGAGTATTTATAACATCTTGAACTCTGCTATGCTATGGTGCTATGATTTAGACTGTATGAATTTTGCACATGGgctaataaaatgaaatgtcaaCCTGTTGCAAA

Function

NR:

description
PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1

GO:

id name namespace
GO:0051974 negative regulation of telomerase activity biological_process
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0010521 telomerase inhibitor activity molecular_function

KEGG:

id description
K11135 PINX1; Pin2-interacting protein X1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944650.2 True 2233 mRNA 0.42 7 7024007 7049333

Neighbor

gene id symbol gene type direction distance location
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 20377 6987109 ~ 7003630 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 112819 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 130654 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 155976 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 175474 6833386 ~ 6848533 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 4625 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 46808 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 69358 7118691 ~ 7147134 (+)
znf513a LOC108257870 coding downstream 159354 7208687 ~ 7219656 (+)
atraid atraid coding downstream 196839 7246172 ~ 7249822 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 41203 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 84388 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 90147 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 189309 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 296493 6713927 ~ 6727514 (+)
G291109 NA non-coding downstream 9050 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 170973 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 211717 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 355095 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 439975 7489308 ~ 7520858 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 4321 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 863967 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1222314 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2044607 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2414406 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 728264 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 994053 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1439314 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1944180 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 2024695 9074028 ~ 9179173 (+)

Expression


Co-expression Network