LOC113545337 (LOC108257647)


Basic Information

Item Value
gene id LOC113545337
gene name LOC108257647
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8549942 ~ 8557745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944651.2
AAGGTGATCAGTTCTCAGCAGATGGATGGTAGATATGCGAGTCGGCTCCCAGCCTTCACCTAGAAGAGCCGGCTCAAAGAGTCGACCTGGTGGCGAATGACACTGCtggataatcacacacacacacacacacacacacacacagctctgtgcgcCGCTGGCTGCAGTCCGTTTCACACGCTTTGGAAATACACAAAGCCAACTCCTTATGGATATTTATTCTTCCAAACTTTCTCCCGCGGTGGATTATGGAGCCGGGGCCTTTCTGCTGCTGATAGCAATTTTGTCCATTGTGGGGAATTTCCTGGTCCTTTTAATGGCATACAAGAGATCTTCTCAGATGAAGCCCGCAGAGCTCCTCAGCGTGAACCTGGCTGTGACAGATCTTGGTGCGGCAGTCTCGATGTACCCTCTTGCTGTAGCATCATCATGGAATCATTCCTGGTTAGGGGGTGATGCCACCTGTATCTACTATGGCTGGATGGGGTTCTTTTTTGGCGTAGCCAGCGTGGCTACCCTGACAGTCATGGCTGTAGTGCGCTTCACTGTATCCATGACACTACAGTCTCACAcGGAGAAAATCACTAAAAGGACGGTGCAGGTGATGTTGGCAGGCACATGGCTGTATGCTCTCTTATGGGCTGTGTTTCCTTTGGTTGGTTGGGGTGTATATGGCCCTGAGCCCTTTGGCTTGTCCTGCACACTGGCCTGGGCAGAGATGAAGGAGCACAGCCCATCCTTTGTCATCAGCATGTTCGCCATGAACCTGGCCATGCCTGCCCTCATCATCGTCTGCTGCTACTTTGGTATCACCCTCCGACTCCATTTGTCCTACAAGTCTCTAGAGAATGGCAATTTCATCCAGAACAGAGTTAAGATGCAGCGCCGTCTCATGTTGATTGCTGTTCTGATCAGCGCTGGTTTCATTGGCTGTTGGACACCCTATGGGATAGTGAGCTTATGGTCAATCTACTCAACTTCTTCCATCACTCCCCATGTCAGTATGTTGCCCTGCCTCTTTGCCAAGACCTCCACTGTGTACAACCCACTGATCTATTACATCTTTAGCAAGTCTTTTAAACAGGAGGTGAAACAGTTTCTCCATGCATGCATTAGATCCCAGGCATGCCGTGGCTCTCAGCCAAATAACCTCACAGAGAATACAGTctacatggtgtgtgaaggaaCCACAGTCAGAGAAGACCTGCATATGGAGCACATGTTTCAAAAGGACAGAGATAGATACTGATACGCAATTCAGACGTGTGAAATATCAATAACTCTGGGATTTCTTTTCCACGTACTCatggattttattcatttccctGTGTGTCTGCTTGTTTAACCAGTTATTTCTTGGGACCAACAATACCCTTAGGTTGGCAGTGTTGCcaagtaataaaatgaaaatcatatgaacattaaaatcatttattaaagcaaATGCTTACCATAAATACACCAAGACACAtgatcaaatatttaaattgataataaataaatgtgtccagTTTAAAAGTCATTGATATTTATTCCAGGTGtaacagagagatggaggaaaaataagaaaatgaatagatgactttatttaaaatattatttagatcAAATTTATATGTAATTACACAATTATGAGAAGCCAGCATGCTAAATTGCAGTGGACAtatattattaccattattataaTTGTCAATATGTTACAACC

Function

GO: NA

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944651.2 True 1705 mRNA 0.44 4 8549942 8557745

Neighbor

gene id symbol gene type direction distance location
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 90214 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 244343 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 359361 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 424279 8088687 ~ 8125663 (+)
trnaa-cgc_7 NA coding upstream 661106 7888765 ~ 7888836 (+)
wdcp wdcp coding downstream 42666 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 78705 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 333923 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 382647 8940392 ~ 8947001 (+)
chgb LOC108258019 coding downstream 429487 8987232 ~ 8990529 (+)
G291996 NA non-coding upstream 39166 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 76214 8470947 ~ 8473728 (+)
G291972 NA non-coding upstream 84905 8464837 ~ 8465037 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 228483 8309242 ~ 8321459 (+)
G291769 NA non-coding upstream 422044 8126021 ~ 8127898 (+)
G292072 NA non-coding downstream 25205 8582950 ~ 8583477 (+)
G292074 NA non-coding downstream 26474 8584219 ~ 8585902 (+)
G292102 NA non-coding downstream 147309 8705054 ~ 8705244 (+)
G292654 NA non-coding downstream 850747 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 856806 9414551 ~ 9415576 (+)
LOC113545369 NA other upstream 15442 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 475498 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 767934 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1530256 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2389902 6135920 ~ 6160040 (+)
G292216 trmt6 other downstream 435768 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 516283 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1346005 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1601210 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 2123565 10681310 ~ 10682664 (+)

Expression


Co-expression Network