LOC113545338 (LOC108257621)


Basic Information

Item Value
gene id LOC113545338
gene name LOC108257621
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9419110 ~ 9424569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944652.2
cacacgcagggtGTTCTTGtacccacacactcactgagcagACGCTCACATGATGGAAGGCatggcagcagcagcaatggCAGACGCACACATGGAGGAACTGGTGGAGCGATCTGGAGCAGCTGAAGATGGAGAAGTTCAGCTGAGAGAACTGTACCCTGATGGCCCTCTCTTAGCACCTGAAGCAGACTTCATAGTAGATGAGCACAGCTCAGCACACAGTAACATGGAGGTGACAGACAGGCTCATGTACTTGGAGCAGCGCCTCCAGATGCAGGAGGATGAGGTGCAGCTGCTGAAGATAGCTCTGGCTGATGTGCTCAAGAGACTCAACATTTCAGAGGCACAAACTGCTGCTCTCTCCAAGAGAGGGCCTGTTAAAGCATCGAGGCCTGTGTCTTTGGCCCTGCCACCCAGAACAACCAGCAATACAGCCAACTCCCTGAAGAAGAGCTCCAGCTCCAcactgccctcttccacattcTCTAAGAATTACAGCCCTTTGCCAGCCAGCAAAAGAAGTCCAGCAAACAGTGCAAAAGACAGTTCAAGTGTTCCTGCAAGCCGACGCACTGCTCAAACAACCAGCACCACCACAACCCCCTGCAAGAAACTTCAAGAGAGCAGCAAACCAAAGGAGACCATCACAAGTGTTGTAGgAACCTGCCGTGTGACTCACTGCAAAGTGACTATGCAGATCTATCTGAGCCACCCAGCAAAAAAGACTGGACCTACTGAGAATGCAGATGCTACAGCTGtgcagctgagtgtgtgtccGCCTGCGAGTGGGCCACCTCCAGATAAAGCAGCCTCAGACAAGAGGAAAGTAGGAGCTGGGAAGAAGCCTCCCTGCACATTATCCCTGCACAAGAGCACATGTCAAAGCCCCTTTTCCCCTGCTGAAACCCCCATCTACAAGAGTCCCATCAAGTCCCCTAGCCAGTATTTCCAGATCTGTTACTAAACACACAGTAGTAGAACCTGGACAACTGATCTGGTGTTCATAAGTTACTAAATAAAGCTGTTGATTGGTGACTGTTGGAAGTGATATTCTGGCTAATTTTTATTAACTCTCTAATGGCTGACATAttggttttaattattttggttTTGATATTGTGAATTTATGGGACCTAATGTGTTGGGTGACATAAGTAATGTTATGGGTCATTTTTGAAAAACGTACCACTAATTagtcat
>XM_026944653.2
cacacgcagggtGTTCTTGtacccacacactcactgagcagACGCTCACATGATGGAAGGCatggcagcagcagcaatggCAGACGCACACATGGAGGAACTGGTGGAGCGATCTGGAGCAGCTGAAGATGGAGAAGTTCAGCTGAGAGAACTGTACCCTGATGGCCCTCTCTTAGCACCTGAAGCAGACTTCATAGTAGATGAGCACAGCTCAGCACACAGTAACATGGAGGTGACAGACAGGCTCATGTACTTGGAGCAGCGCCTCCAGATGCAGGAGGATGAGGTGCAGCTGCTGAAGATAGCTCTGGCTGATGTGCTCAAGAGACTCAACATTTCAGAGGCACAAACTGCTGCTCTCTCCAAGAGAGGGCCTGTTAAAGCATCGAGGCCTGTGTCTTTGGCCCTGCCACCCAGAACAACCAGCAATACAGCCAACTCCCTGAAGAAGAGCTCCAGCTCCAcactgccctcttccacattcTCTAAGAATTACAGCCCTTTGCCAGCCAGCAAAAGAAGTCCAGCAAACAGTGCAAAAGACAGTTCAAGTGTTCCTGCAAGCCGACGCACTGCTCAAACAACCAGCACCACCACAACCCCCTGCAAGAAACTTCAAGAGAGCAAACCAAAGGAGACCATCACAAGTGTTGTAGgAACCTGCCGTGTGACTCACTGCAAAGTGACTATGCAGATCTATCTGAGCCACCCAGCAAAAAAGACTGGACCTACTGAGAATGCAGATGCTACAGCTGtgcagctgagtgtgtgtccGCCTGCGAGTGGGCCACCTCCAGATAAAGCAGCCTCAGACAAGAGGAAAGTAGGAGCTGGGAAGAAGCCTCCCTGCACATTATCCCTGCACAAGAGCACATGTCAAAGCCCCTTTTCCCCTGCTGAAACCCCCATCTACAAGAGTCCCATCAAGTCCCCTAGCCAGTATTTCCAGATCTGTTACTAAACACACAGTAGTAGAACCTGGACAACTGATCTGGTGTTCATAAGTTACTAAATAAAGCTGTTGATTGGTGACTGTTGGAAGTGATATTCTGGCTAATTTTTATTAACTCTCTAATGGCTGACATAttggttttaattattttggttTTGATATTGTGAATTTATGGGACCTAATGTGTTGGGTGACATAAGTAATGTTATGGGTCATTTTTGAAAAACGTACCACTAATTagtcat
>XM_026944654.2
cacacgcagggtGTTCTTGtacccacacactcactgagcagACGCTCACATGATGGAAGGCatggcagcagcagcaatggCAGACGCACACATGGAGGAACTGGTGGAGCGATCTGGAGCAGCTGAAGATGGAGAAGTTCAGCTGAGAGAACTGTACCCTGATGGCCCTCTCTTAGCACCTGAAGCAGACTTCATAGTAGATGAGCACAGCTCAGCACACAGTAACATGGAGGTGACAGACAGGCTCATGTACTTGGAGCAGCGCCTCCAGATGCAGGAGGATGAGGTGCAGCTGCTGAAGATAGCTCTGGCTGATGTGCTCAAGAGACTCAACATTTCAGAGGCACAAACTGCTGCTCTCTCCAAGAGAGGGCCTGTTAAAGCATCGAGGCCTGTGTCTTTGGCCCTGCCACCCAGAACAACCAGCAATACAGCCAACTCCCTGAAGAAGAGCTCCAGCTCCAcactgccctcttccacattcTCTAAGAATTACAGCCCTTTGCCAGCCAGCAAAAGAAGTCCAGCAAACAGTGCAAAAGACAGTTCAAGTGTTCCTGCAAGCCGACGCACTGCTCAAACAACCAGCACCACCACAACCCCCTGCAAGAAACTTCAAGAGAGCAGCAAACCAAAGGAGACCATCACAAGTGTTGTAGgAACCTGCCGTGTGACTCACTGCAAAGATCTATCTGAGCCACCCAGCAAAAAAGACTGGACCTACTGAGAATGCAGATGCTACAGCTGtgcagctgagtgtgtgtccGCCTGCGAGTGGGCCACCTCCAGATAAAGCAGCCTCAGACAAGAGGAAAGTAGGAGCTGGGAAGAA
>XM_026944656.2
cacacgcagggtGTTCTTGtacccacacactcactgagcagACGCTCACATGATGGAAGGCatggcagcagcagcaatggCAGACGCACACATGGAGGAACTGGTGGAGCGATCTGGAGCAGCTGAAGATGGAGAAGTTCAGCTGAGAGAACTGTACCCTGATGGCCCTCTCTTAGCACCTGAAGCAGACTTCATAGTAGATGAGCACAGCTCAGCACACAGTAACATGGAGGTGACAGACAGGCTCATGTACTTGGAGCAGCGCCTCCAGATGCAGGAGGATGAGGTGCAGCTGCTGAAGATAGCTCTGGCTGATGTGCTCAAGAGACTCAACATTTCAGAGGCACAAACTGCTGCTCTCTCCAAGAGAGGGCCTGTTAAAGCATCGAGGCCTGTGTCTTTGGCCCTGCCACCCAGAACAACCAGCAATACAGCCAACTCCCTGAAGAAGAGCTCCAGCTCCAcactgccctcttccacattcTCTAAGAATTACAGCCCTTTGCCAGCCAGCAAAAGAAGTCCAGCAAACAGTGCAAAAGACAGTTCAAGTGTTCCTGCAAGCCGACGCACTGCTCAAACAACCAGCACCACCACAACCCCCTGCAAGAAACTTCAAGAGAGCAAACCAAAGGAGACCATCACAAGTGTTGTAGgAACCTGCCGTGTGACTCACTGCAAAGATCTATCTGAGCCACCCAGCAAAAAAGACTGGACCTACTGAGAATGCAGATGCTACAGCTGtgcagctgagtgtgtgtccGCCTGCGAGTGGGCCACCTCCAGATAAAGCAGCCTCAGACAAGAGGAAAGTAGGAGCTGGGAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944652.2 True 1200 mRNA 0.49 7 9419110 9424569
XM_026944653.2 False 1197 mRNA 0.48 7 9419110 9424569
XM_026944654.2 False 832 mRNA 0.53 7 9419110 9424212
XM_026944656.2 False 829 mRNA 0.53 7 9419110 9424212

Neighbor

gene id symbol gene type direction distance location
LOC113545286 LOC108258122 coding upstream 6875 9389746 ~ 9412235 (+)
LOC113545203 NA coding upstream 33315 9384881 ~ 9385795 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding upstream 80750 9336792 ~ 9338360 (+)
lamp5 lamp5,LOC107704368 coding upstream 154259 9258394 ~ 9264851 (+)
LOC113545235 plcb4,LOC108258041 coding upstream 163861 9183432 ~ 9255249 (+)
evlb evlb,LOC108258102,LOC108411639,LOC103359910 coding downstream 1876 9426445 ~ 9463533 (+)
yy1b yy1a,LOC108258103,LOC108411685,LOC107712210,LOC101066055 coding downstream 39412 9463981 ~ 9474164 (+)
entpd5b LOC108257529 coding downstream 70676 9495245 ~ 9505126 (+)
LOC113545265 c25h14orf37,LOC107717645,LOC107659812,LOC107574488,LOC107713862 coding downstream 117839 9542408 ~ 9551941 (+)
LOC113545275 LOC108257654 coding downstream 149782 9574351 ~ 9577558 (+)
G292643 NA non-coding upstream 3534 9414551 ~ 9415576 (+)
G292654 NA non-coding upstream 10396 9408492 ~ 9408714 (+)
G292102 NA non-coding upstream 713866 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 833208 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 835633 8582950 ~ 8583477 (+)
G292765 NA non-coding downstream 129868 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 163131 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 187419 9611988 ~ 9612612 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding downstream 188856 9613425 ~ 9616591 (+)
G292929 NA non-coding downstream 443580 9868149 ~ 9868609 (+)
LOC113545247 plcb1,LOC108258091 other upstream 239937 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 422114 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 884610 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 1344666 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1637102 7777597 ~ 7782008 (+)
G293016 ileu other downstream 479181 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 734386 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1256741 10681310 ~ 10682664 (+)
G293528 NA other downstream 1593837 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 2136853 11561422 ~ 11579249 (+)

Expression


Co-expression Network