scrn2 (scrn2,LOC107697287,LOC107581469,LOC107733816)


Basic Information

Item Value
gene id scrn2
gene name scrn2,LOC107697287,LOC107581469,LOC107733816
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5052030 ~ 5064149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944660.2
GGGAACTAGCCGTTAGGTggcttttattttgacaccaCTTTAACAGCAGGTTGCCAGACAGAGCCCTGCTTTTTCCTGTACCTGCTAGCTGCCGGATCTGGACCtttaaagaagaaacaaaagGATGGCCGAACCACCCCAGTCATGTGACTGTTTTGTATCTCTGCCGCCCGGTTCTAAATATGACCATGTGATATTTGGTAAGAATTCTGATCGACCAAGGGACGAGGTGCAGGAAGTGGTTTActaccctgctgcctcccataGCCCCGGCGCCACAGTGGAGTGCACATACATCTCAATCCCACAAGTGGAGCACACACATGCGGTGGTGCTGAGCAGGCCTGCCTGGCTGTGGGGGGCTGAGATGGGAGCCAACGAACACGGCGTGTGTGTAGGGAATGAGGCCGTGTGGACCCGTGAACCTGTAAATCCGGAGGAAGCGCTGCTCGGCATGGACCTGGTGCGtttggCTCTGGAGCGTGGTGACAGTGCGTGGGCTGCGCTGCGCGTGATCACGGAGCTGCTGGAACAGCATGGTCAGGGTGGAGCATGCAGAGAGGATCCTGAACACTTCAGCTACCAAAATACCTTCCTGCTGGCTGATCGCCAAGAAGCCTGGGTCCTGGAGACTGCTGGGAAGCTCTGGGCTGCTCAGAAAATTACAGaggGAGTGAAGAACATCTCCAACCAGCTGACGATAGGCACTGAGATCTCTGCGGAGCATCCGGAGCTGCGCAGTAGCGCTCAGTCTCAGGGCTGGTGGAACGGAGAGGATGAGTTTAGCTTCACGGCAGCGTTTAGCCCAGACAACCCCCCTGCTAGAATGGAGCTGGCCAAGCAGCGTTATAGAGGAGGCACAGCGCTGCTTCAGGAACATGATGgctCTGTAACAGCGGAGGTGATGATGAGCATCCTGAGGGACAAGCCCAGCGGCATCTGCATGGATTCGGCAGGTTTCCGCACCACAGGCAGCATGGTTTCCATCCTCCCCCGAGATCCCAGCATGCCCTGCGTTCACTTCTTCACTGCCACCCCAGATCCCTCCAGGTCTGTTTTCAAGCCATTCATCTTCTCGGACAGCGTGCGCCCTGTTACCATGGTGATGTCCCCACAGTATGGCTCAGATGATCCTGTGAAGTCTCAGCCTCGATTCCAGCGTCAGGTGGACAGGAAGCACGAGCTTTATCAAGCTCACCAGGCTGCCGTGGAGGCAAATCCGGATGGTGCAGTGTCTCTACAGGAGACTATGTGCTTCTTAGAGTCACAGTGTCTGCAGGAGATTGAAGCCATGCTTAGGGGGGAAGTGGAGGGCCAGGAGCTCGGCGATCTCTTCTTCGACTGCGTGGACACAGAGATAAAGTTCTACCAGTGAGACACAGCAGTTGTCTTGTGAATGTCGCTAGTGCTTGCTGATCTGCTCCGGAGAGGGACGGGACGGGCCTGTCTGCTCCGATACACCTCTCTTAGTTCCCCTGATGCAATGCAACACATCGTGATGTCCATTAACATGCCACACTAATTGTAACTGTATGATACAGGTACTAGATGTTCATGCCCCATAATCATGTGTAATTGTCGCACCAGGCAGTCATATACGCACCACATTAATGAGTAAGTGATAGATTactaaggtgtgtgtgtagagaatagagtgtgtgagaagagaATAGTGGAGGCATACTCTGATCAGTCCTGTGTACGTTCACGAGGGTTCGGCTGCCTGGCTGGTCCTCAGAGGAGAATGTGAATAAAAGTAACAACTTTACACTGGA

Function

symbol description
scrn2 Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human SCRN2 (secernin 2).

NR:

description
PREDICTED: secernin-2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG:

id description
K14358 SCRN; secernin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944660.2 True 1775 mRNA 0.54 9 5052030 5064149

Neighbor

gene id symbol gene type direction distance location
suco suco,LOC107712873,LOC107687343 coding upstream 3588 4998148 ~ 5048442 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding upstream 112519 4932489 ~ 4939511 (+)
prrc2c prrc2c,LOC107712868 coding upstream 165529 4859323 ~ 4886501 (+)
LOC113545311 LOC108257966,LOC108415675 coding upstream 197305 4847581 ~ 4854725 (+)
LOC117599802 LOC108257967 coding upstream 205996 4835086 ~ 4846034 (+)
mysm1 mysm1 coding downstream 2161 5066310 ~ 5077918 (+)
oma1 oma1 coding downstream 15072 5079221 ~ 5097477 (+)
dab1a dab1,dab1a,LOC107581465 coding downstream 263016 5327165 ~ 5502404 (+)
LOC113545193 NA coding downstream 441690 5505839 ~ 5520633 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding downstream 478807 5542956 ~ 5575570 (+)
G290030 NA non-coding upstream 144218 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 155643 4896122 ~ 4896387 (+)
G290009 NA non-coding upstream 237234 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 245450 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 249002 4802813 ~ 4803028 (+)
LOC117599804 NA non-coding downstream 83036 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 189368 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 238481 5302630 ~ 5306902 (+)
G290417 NA non-coding downstream 479969 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 515669 5579818 ~ 5588495 (+)
dnm3a dnm3,dnm3a other upstream 72630 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 442429 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 713731 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 742101 4248330 ~ 4309929 (+)
G289531 NA other upstream 981663 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 671324 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1071771 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1948593 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2713448 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2979237 8043386 ~ 8074444 (+)

Expression


Co-expression Network