sirt5 (sirt5,LOC107687181,LOC107712885)


Basic Information

Item Value
gene id sirt5
gene name sirt5,LOC107687181,LOC107712885
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5875188 ~ 5887559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944673.2
CCAGTAACTTGCCCCAGCTAATATGGCGGACGCGCTGACGCATGAAAATAGTAAAATGGCGTCTCAGTGGTGGGCAGGCAGACAGCTTTCACCCTTCTCACCTTCTGAACCAGGTTTATGGAGAAGCCGTTTCCAGagCTGGGTGTGATTTTGGAACCCTGATGATTGTGCAGGCGTTGGTCTACAAGGCTGTGACCCTTCGTCTATGTTCCAGAGTCAAATTTACCTGGTGTGCATCTAAGATGGCCAGACCAAGCTCAGattTAGCAGCTTTTCGTAAAGACTTCGCTAAGGCCAAGCACATAGCGATAATCACTGGAGCTGGAGTCAGTGCAGAGAGTGGAGTGCCAACCTTCAGAGGAGCTGGTGGCTACTGGAGGAAGTGGCAGGCTCAGgaTTTGGCCACCCCACAAGCATTCTCCCGAGATCCATCCCTGGTTTGGGAGTTTTATCACTATAGACGTGAGgTTATGTCCAGTAAGCAGCCGAATCCAGCCCACCTGGCTATAGCCGAGTGCGAGGCCCGCCTCAGCCAACAGGGGCGCTCTGTGGTTGTTATTACGCAGAATATTGATGAGTTGCATCGTCGAGCAGGTTCCAGAAATGTGCTGGAGATCCATGGTAGTCTGTTTAAAACTCGCTGCATGAGCTGTGGTGAAGTCAAGGAGAACTACAAGAGCCCTATATGCTCTGCTTTGGAGGGGAAAGgAGCACCTGATCCCAAAGCCAAAGATGCCAGAATACCAAAAGAAGATCtgcccagATGTGAGGCGAAGCGCTGTCGTGGTCTTCTGAGGCCTCATGTGGTGTGGTTTGGAGAGTCGCTGGATCCTGATATTCTGACCAGAGCAGATCAAGAGCTGAAGAGATGTGATCTCTGCTTAGTGGTGGGTACGTCCTCGATAGTTTACCCAGCAGCCATGTTTGCTCCTCAGGTGGCAGCTAGAGGAGTGCCTGTGGCTGAATTTAACATGGAATGCACACCTGCCACCACGTGCTTTATGTATCATTTTGATGGTCCGTGTGGTAGCACTCTGCCTCCTGCCCTGGCACCCCATGAGAGCGAGGGTGTCTGAGGAATCCACCAGCCCAAAGCACCTGGTCCAGCACTTTATAACAAACAACACGTCTCCTTTGTGTTGTTGATCGTCTTCTTTTGCATCCTGTCCCTGTACTTGTGTTCTGCTTGATGTGAAGAAAAAACTGATgacatttgacaaaaaaaaattaataaattcatctgtccatttta
>XM_026944674.2
TTCAGCAACGTTAATATTGGTAATATTGGAAGATAGCCGACTGTAATAACGTTAGGTATTTCATGCTGTCACTTTGCTAGCTCTGAGTTATTTGTGTTGATGTCGAATCTGTGGTTTGGTTTGTCATGGTCCAATTACCGCAGGAACTTTTGTTTACCAGGagCTGGGTGTGATTTTGGAACCCTGATGATTGTGCAGGCGTTGGTCTACAAGGCTGTGACCCTTCGTCTATGTTCCAGAGTCAAATTTACCTGGTGTGCATCTAAGATGGCCAGACCAAGCTCAGattTAGCAGCTTTTCGTAAAGACTTCGCTAAGGCCAAGCACATAGCGATAATCACTGGAGCTGGAGTCAGTGCAGAGAGTGGAGTGCCAACCTTCAGAGGAGCTGGTGGCTACTGGAGGAAGTGGCAGGCTCAGgaTTTGGCCACCCCACAAGCATTCTCCCGAGATCCATCCCTGGTTTGGGAGTTTTATCACTATAGACGTGAGgTTATGTCCAGTAAGCAGCCGAATCCAGCCCACCTGGCTATAGCCGAGTGCGAGGCCCGCCTCAGCCAACAGGGGCGCTCTGTGGTTGTTATTACGCAGAATATTGATGAGTTGCATCGTCGAGCAGGTTCCAGAAATGTGCTGGAGATCCATGGTAGTCTGTTTAAAACTCGCTGCATGAGCTGTGGTGAAGTCAAGGAGAACTACAAGAGCCCTATATGCTCTGCTTTGGAGGGGAAAGgAGCACCTGATCCCAAAGCCAAAGATGCCAGAATACCAAAAGAAGATCtgcccagATGTGAGGCGAAGCGCTGTCGTGGTCTTCTGAGGCCTCATGTGGTGTGGTTTGGAGAGTCGCTGGATCCTGATATTCTGACCAGAGCAGATCAAGAGCTGAAGAGATGTGATCTCTGCTTAGTGGTGGGTACGTCCTCGATAGTTTACCCAGCAGCCATGTTTGCTCCTCAGGTGGCAGCTAGAGGAGTGCCTGTGGCTGAATTTAACATGGAATGCACACCTGCCACCACGTGCTTTATGTATCATTTTGATGGTCCGTGTGGTAGCACTCTGCCTCCTGCCCTGGCACCCCATGAGAGCGAGGGTGTCTGAGGAATCCACCAGCCCAAAGCACCTGGTCCAGCACTTTATAACAAACAACACGTCTCCTTTGTGTTGTTGATCGTCTTCTTTTGCATCCTGTCCCTGTACTTGTGTTCTGCTTGATGTGAAGAAAAAACTGATgacatttgacaaaaaaaaattaataaattcatctgtccatttta

Function

symbol description
sirt5 Enables acyl binding activity and heterocyclic compound binding activity. Predicted to be involved in protein deacylation and regulation of ketone biosynthetic process. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and mitochondrion. Is expressed in liver and retina. Orthologous to human SIRT5 (sirtuin 5).

NR:

description
PREDICTED: NAD-dependent protein deacylase sirtuin-5, mitochondrial isoform X1

GO:

id name namespace
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0006476 protein deacetylation biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11415 SIRT5, SIR2L5; NAD+-dependent protein deacetylase sirtuin 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944673.2 False 1252 mRNA 0.50 10 5875188 5887559
XM_026944674.2 True 1277 mRNA 0.48 10 5875369 5887559

Neighbor

gene id symbol gene type direction distance location
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding upstream 7175 5863591 ~ 5868013 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 18632 5844033 ~ 5856556 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 299618 5542956 ~ 5575570 (+)
LOC113545193 NA coding upstream 354555 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 372784 5327165 ~ 5502404 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 17135 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 70872 5958431 ~ 5961185 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding downstream 181048 6068607 ~ 6075045 (+)
trappc8 trappc8 coding downstream 202867 6090426 ~ 6127902 (+)
dsc2l NA coding downstream 327182 6214741 ~ 6230552 (+)
LOC117599801 NA non-coding upstream 56122 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 67272 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 69600 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 70848 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 140888 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 350155 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 454704 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 535113 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 826368 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 946848 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 73495 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 895788 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1265587 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1536889 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1565259 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 248361 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1125183 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1890038 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2155827 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2601088 8488647 ~ 8534500 (+)

Expression


Co-expression Network