gmds (gmds,LOC107711642)


Basic Information

Item Value
gene id gmds
gene name gmds,LOC107711642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9945790 ~ 10025924 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944678.2
tctgtATTTCCTCTACTACGTCATCGCAGTGCGTCATCGCCGGCGTGCTCTGTGATTGGCTTCTCGCGGTGTGTTTAGTCTGAAAGTGCCGCTCCGTGAAGCAGAAAAGTCTccggaacagagagagagagaaagctcaGCTCGACAGGAAGACAGGAGCTCAACACTTTACTCCCAACCCGGACCGGTAGACGATGGCTCAGTGCGCGGGGACGACTTCCGGTTCTGCTGCTAACGGCTGCGGTGGCAAGTCGAGGAAAGTCGCCATCATCACCGGCATCACCGGGCAGgatggaTCATACTTGGCAGAGTTTCTCCTGAAGAAAGGATATGAGGTTCACGGGATCCTGCGCAGGTCCAGCTCCTTTAACACTGGCCGAATTGAGCACCTTTACCATAACCCTCAGACACACACGGAAGGAACAGGTTCTGCCGATTCAGCAGGGTacaTGAAGTTGCACTATGGGGACCTAACTGACAGCACTTGCCTGGTGAAAATTATCAATGAAGTCAAACCCACAGAAATCTACAACCTGGGAGCACAGAGTCATGTTAAGaTTTCCTTTGACCTGGCAGAGTACACTGCAGACGTCGACGGCGTGGGGACGTTGCGTTTGTTGGACGCGATAAAGACGTGCGGTTTGACGGATAAAGTGCGTTTCTATCAGGCCTCCACCAGCGAGCTGTACGGCAAAGTGCAGGAGATCCCACAGACAGAGACCACGCCGTTCTACCCTCGCTCACCTTAtggtgcTGCTAAGCTGTATGCGTACTGGATAGTAGTGAACTTCAGGGAGGCGTATAATCTGTTTGCTGTGAATGGAATTCTCTTCAATCATGAGAGCCCTAGAAGAGGCTCTAACTTTGTGACACGGAAAATTAGTCGTTCAGTGGCAAAGATCCACCTCGGCCAATTAGAGTACTTCAgtctgggtaatctggactccaAGAGAGACTGGGGCCATGCCAGAGACTATGTGGAGgccaTGTGGCTGATGTTGCagcaggaggagccggaggATTTTGTCATAGCTACAGGAGAGGTCCACAGCGTGAGAGAGTTTGTGGAGAGAGCCTTCAAACACGTGGGCAAGTCCATTGTGTGGGAGGGGAAGAATGAGAACGAGGTAGGCAGGTGTCAGGAGACAGGAGTCGTCCATGTCAAAGTGGACCCCAAGTACTACCGGCCCACTGAAGTGgACTATCTGCAGGGAGACAGCACCAAAGCGCTGAAGAAACTTGGCTGGAAGCCACAAGTGACCTTCGAGGAGCTTGTTAAGGAGATGGTGGACGCAGATATTGAGCTCATGAGAAGCAACCCAAATGCATGAGCCCGCACGCTAGCAGCACATCTACATACCACGGACCTGTGTGTGCCCAAGAAAGAACAcgctttagtcttttttttccttccaggCACTCCGTCCTGCCTTCAGTTCGTCTacataaagaaagacagagtgcTGCATTTGACATTCCACATTCTGTTTATACTGTTATGTCTAATCAcaatcatcagtgtgtgtggggaCTTTTAGCAGTTTTCGTTTTtctgtaacaatttttttttaaatccagttttATATGGTTTCTTTTTAATGTCATAATTGTGGTGAGGGGGTGtgggcacatgtaaagaaattatGTTTTATAGCAGTTTACAGTGGGACGATTTTCTAGATGAACATTGGATTTCAGACAAAAATCTATATAGAGGCTtaataaatgctgaaaaacGTCCTTGAAAAATTGTTAGAAtgcttttaattatttgtttaatcatGCCATCTTTGATAtttaatagtttttctttaaactttatttaatttacatattaattattttatcgtgactttgtttattaaaaGGGGTTTTAGATCATATCCATAATTGTA
>XM_026944679.2
tctgtATTTCCTCTACTACGTCATCGCAGTGCGTCATCGCCGGCGTGCTCTGTGATTGGCTTCTCGCGGTGTGTTTAGTCTGAAAGTGCCGCTCCGTGAAGCAGAAAAGTCTccggaacagagagagagagaaagctcaGCTCGACAGGAAGACAGGAGCTCAACACTTTACTCCCAACCCGGACCGGTAGACGATGGCTCAGTGCGCGGGGACGACTTCCGGTTCTGCTGCTAACGGCTGCGGTGGCAAGTCGAGGAAAGTCGCCATCATCACCGGCATCACCGGGCAGgatggaTCATACTTGGCAGAGTTTCTCCTGAAGAAAGGATATGAGGTTCACGGGATCCTGCGCAGGTCCAGCTCCTTTAACACTGGCCGAATTGAGCACCTTTACCATAACCCTCAGACACACACGGAAGGAAGTTCTGCCGATTCAGCAGGGTacaTGAAGTTGCACTATGGGGACCTAACTGACAGCACTTGCCTGGTGAAAATTATCAATGAAGTCAAACCCACAGAAATCTACAACCTGGGAGCACAGAGTCATGTTAAGaTTTCCTTTGACCTGGCAGAGTACACTGCAGACGTCGACGGCGTGGGGACGTTGCGTTTGTTGGACGCGATAAAGACGTGCGGTTTGACGGATAAAGTGCGTTTCTATCAGGCCTCCACCAGCGAGCTGTACGGCAAAGTGCAGGAGATCCCACAGACAGAGACCACGCCGTTCTACCCTCGCTCACCTTAtggtgcTGCTAAGCTGTATGCGTACTGGATAGTAGTGAACTTCAGGGAGGCGTATAATCTGTTTGCTGTGAATGGAATTCTCTTCAATCATGAGAGCCCTAGAAGAGGCTCTAACTTTGTGACACGGAAAATTAGTCGTTCAGTGGCAAAGATCCACCTCGGCCAATTAGAGTACTTCAgtctgggtaatctggactccaAGAGAGACTGGGGCCATGCCAGAGACTATGTGGAGgccaTGTGGCTGATGTTGCagcaggaggagccggaggATTTTGTCATAGCTACAGGAGAGGTCCACAGCGTGAGAGAGTTTGTGGAGAGAGCCTTCAAACACGTGGGCAAGTCCATTGTGTGGGAGGGGAAGAATGAGAACGAGGTAGGCAGGTGTCAGGAGACAGGAGTCGTCCATGTCAAAGTGGACCCCAAGTACTACCGGCCCACTGAAGTGgACTATCTGCAGGGAGACAGCACCAAAGCGCTGAAGAAACTTGGCTGGAAGCCACAAGTGACCTTCGAGGAGCTTGTTAAGGAGATGGTGGACGCAGATATTGAGCTCATGAGAAGCAACCCAAATGCATGAGCCCGCACGCTAGCAGCACATCTACATACCACGGACCTGTGTGTGCCCAAGAAAGAACAcgctttagtcttttttttccttccaggCACTCCGTCCTGCCTTCAGTTCGTCTacataaagaaagacagagtgcTGCATTTGACATTCCACATTCTGTTTATACTGTTATGTCTAATCAcaatcatcagtgtgtgtggggaCTTTTAGCAGTTTTCGTTTTtctgtaacaatttttttttaaatccagttttATATGGTTTCTTTTTAATGTCATAATTGTGGTGAGGGGGTGtgggcacatgtaaagaaattatGTTTTATAGCAGTTTACAGTGGGACGATTTTCTAGATGAACATTGGATTTCAGACAAAAATCTATATAGAGGCTtaataaatgctgaaaaacGTCCTTGAAAAATTGTTAGAAtgcttttaattatttgtttaatcatGCCATCTTTGATAtttaatagtttttctttaaactttatttaatttacatattaattattttatcgtgactttgtttattaaaaGGGGTTTTAGATCATATCCATAATTGTA
>XM_026944680.2
ctgtATTTCCTCTACTACGTCATCGCAGTGCGTCATCGCCGGCGTGCTCTGTGATTGGCTTCTCGCGGTGTGTTTAGTCTGAAAGTGCCGCTCCGTGAAGCAGAAAAGTCTccggaacagagagagagagaaagctcaGCTCGACAGGAAGACAGGAGCTCAACACTTTACTCCCAACCCGGACCGGTAGACGATGGCTCAGTGCGCGGGGACGACTTCCGGTTCTGCTGCTAACGGCTGCGGTGGCAAGTCGAGGAAAGTCGCCATCATCACCGGCATCACCGGGCAGgatggaTCATACTTGGCAGAGTTTCTCCTGAAGAAAGGATATGAGGTTCACGGGATCCTGCGCAGGTCCAGCTCCTTTAACACTGGCCGAATTGAGCACCTTTACCATAACCCTCAGACACACACGGAAGGAAacaTGAAGTTGCACTATGGGGACCTAACTGACAGCACTTGCCTGGTGAAAATTATCAATGAAGTCAAACCCACAGAAATCTACAACCTGGGAGCACAGAGTCATGTTAAGaTTTCCTTTGACCTGGCAGAGTACACTGCAGACGTCGACGGCGTGGGGACGTTGCGTTTGTTGGACGCGATAAAGACGTGCGGTTTGACGGATAAAGTGCGTTTCTATCAGGCCTCCACCAGCGAGCTGTACGGCAAAGTGCAGGAGATCCCACAGACAGAGACCACGCCGTTCTACCCTCGCTCACCTTAtggtgcTGCTAAGCTGTATGCGTACTGGATAGTAGTGAACTTCAGGGAGGCGTATAATCTGTTTGCTGTGAATGGAATTCTCTTCAATCATGAGAGCCCTAGAAGAGGCTCTAACTTTGTGACACGGAAAATTAGTCGTTCAGTGGCAAAGATCCACCTCGGCCAATTAGAGTACTTCAgtctgggtaatctggactccaAGAGAGACTGGGGCCATGCCAGAGACTATGTGGAGgccaTGTGGCTGATGTTGCagcaggaggagccggaggATTTTGTCATAGCTACAGGAGAGGTCCACAGCGTGAGAGAGTTTGTGGAGAGAGCCTTCAAACACGTGGGCAAGTCCATTGTGTGGGAGGGGAAGAATGAGAACGAGGTAGGCAGGTGTCAGGAGACAGGAGTCGTCCATGTCAAAGTGGACCCCAAGTACTACCGGCCCACTGAAGTGgACTATCTGCAGGGAGACAGCACCAAAGCGCTGAAGAAACTTGGCTGGAAGCCACAAGTGACCTTCGAGGAGCTTGTTAAGGAGATGGTGGACGCAGATATTGAGCTCATGAGAAGCAACCCAAATGCATGAGCCCGCACGCTAGCAGCACATCTACATACCACGGACCTGTGTGTGCCCAAGAAAGAACAcgctttagtcttttttttccttccaggCACTCCGTCCTGCCTTCAGTTCGTCTacataaagaaagacagagtgcTGCATTTGACATTCCACATTCTGTTTATACTGTTATGTCTAATCAcaatcatcagtgtgtgtggggaCTTTTAGCAGTTTTCGTTTTtctgtaacaatttttttttaaatccagttttATATGGTTTCTTTTTAATGTCATAATTGTGGTGAGGGGGTGtgggcacatgtaaagaaattatGTTTTATAGCAGTTTACAGTGGGACGATTTTCTAGATGAACATTGGATTTCAGACAAAAATCTATATAGAGGCTtaataaatgctgaaaaacGTCCTTGAAAAATTGTTAGAAtgcttttaattatttgtttaatcatGCCATCTTTGATAtttaatagtttttctttaaactttatttaatttacatattaattattttatcgtgactttgtttattaaaaGGGGTTTTAGATCATATCCATAATTGTA

Function

symbol description
gmds Enables fucosyltransferase activity. Acts upstream of or within Notch signaling pathway; central nervous system development; and retina layer formation. Predicted to be active in cytoplasm. Is expressed in EVL; corneal epithelium; neuromast; and periderm. Used to study congenital disorder of glycosylation type IIc. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase).

NR:

description
GDP-mannose 4,6 dehydratase

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0021564 vagus nerve development biological_process
GO:0036065 fucosylation biological_process
GO:0019673 GDP-mannose metabolic process biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0010842 retina layer formation biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008417 fucosyltransferase activity molecular_function
GO:0008446 GDP-mannose 4,6-dehydratase activity molecular_function
GO:0070401 NADP+ binding molecular_function

KEGG:

id description
K01711 gmd, GMDS; GDPmannose 4,6-dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944678.2 True 1895 mRNA 0.47 12 9945790 10025924
XM_026944679.2 False 1892 mRNA 0.47 12 9945790 10025924
XM_026944680.2 False 1870 mRNA 0.47 11 9945791 10025924

Neighbor

gene id symbol gene type direction distance location
mylk4b mylk4,LOC108257896,LOC101163967,LOC103463388 coding upstream 4395 9917365 ~ 9941395 (+)
ypel5 ypel5,slc30a10,LOC107568027,LOC102210471,LOC102788175,LOC108441457,LOC103458748 coding upstream 273262 9667681 ~ 9672528 (+)
faua fau,LOC108411505,LOC105017549 coding upstream 314681 9627578 ~ 9631109 (+)
prpf39 prpf39 coding upstream 319680 9618830 ~ 9626110 (+)
LOC113545275 LOC108257654 coding upstream 368232 9574351 ~ 9577558 (+)
exoc2 exoc2,LOC107721345,LOC107711641,LOC107665386,LOC107659211 coding downstream 65445 10091369 ~ 10121300 (+)
LOC113545207 LOC108257895 coding downstream 111065 10136989 ~ 10140336 (+)
LOC117599727 LOC108261516,LOC108257915 coding downstream 144868 10170792 ~ 10186791 (+)
katnbl1 katnbl1 coding downstream 340244 10366168 ~ 10374001 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948 coding downstream 348639 10374563 ~ 10378224 (+)
G292929 NA non-coding upstream 77181 9868149 ~ 9868609 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding upstream 329199 9613425 ~ 9616591 (+)
G292756 NA non-coding upstream 333178 9611988 ~ 9612612 (+)
G292771 NA non-coding upstream 357887 9587700 ~ 9587903 (+)
G292765 NA non-coding upstream 390983 9554437 ~ 9554807 (+)
G293095 LOC108257535,LOC107682698 non-coding downstream 10527 10036451 ~ 10038355 (+)
G293110 NA non-coding downstream 37841 10063765 ~ 10064011 (+)
LOC117599717 NA non-coding downstream 172925 10198849 ~ 10210998 (+)
G293350 NA non-coding downstream 511040 10536964 ~ 10537640 (+)
G293345 NA non-coding downstream 526317 10552241 ~ 10553007 (+)
LOC113545247 plcb1,LOC108258091 other upstream 766617 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 948794 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 1411290 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 1871346 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 2163782 7777597 ~ 7782008 (+)
LOC117599798 NA other downstream 133031 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 655386 10681310 ~ 10682664 (+)
G293528 NA other downstream 992482 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 1535498 11561422 ~ 11579249 (+)
rps29 NA other downstream 1698057 11723981 ~ 11725332 (+)

Expression


Co-expression Network