igfbp1a (LOC100305121)


Basic Information

Item Value
gene id igfbp1a
gene name LOC100305121
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5958431 ~ 5961185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944681.2
CGGGCGCAAGGAGAACAGCACCAGTCAGTCCATCGGCGAAACAAAGCCAAGTAGTCGTTAGTACTTACGCGttaggatttatttattcattatatagcTATTTGTATTTGATCGCTTTGGAATGAGCGGAGTCTTTCTGAAGTTGTTCCACGCGGTGGTACTTGGCGCGGTCCTCTTGGCGCCACAGCTCCGCGCTTCCCCGCTCCTGGAGCCGATCCGGTGCGCGCAGTGCACCGCAGAGCGCGTGGCTGAGTGTCCGCCAGTGGATGCTGCTTGTGCAGAGGTGCTGCGGGAGCCGGGATGTGGCTGCTGTCTGGCGTGCGCGCTTAAGCGCGGGGATCTGTGCGGCATCTACACGGCGCCGTGCGGCTCGGGGCTGCGCTGCTTGCCCACACCTGGAGAAGTGCGGCCTCTGTATGCGCTCACACGGGGGCAAGCCGTGTGCACTGAGATCGGGGAGGACGTGCAGAGCCGCACGCAGCCGGCGCCAGATCAGCCCGAGGTGGAGGGTGATGGTCGGAGCGAGGCTTCTGCGGGTCCTGAAGCCGCCTCACCGATCGTCGTGTCGGGCCACATCAAGCCCTACGACCCGTGGCTCCTCAGCGGCGCTCAGGAGAGCATGAAGTCCAAAGTGAACACCTACAGAAGGAAACTTGTTGAGCTGGGCCCCTGCCATGTGGAGTTACAGAGAGCTCTTGAGAAGATTGCTCGATCCCAACAGAAGCTGGAAGAGAAGCTGACCAAGTTCTACCTGCCTAACTGTGATAAACAAGGCCTGTACAAACCCAAACAGTGTGAATCGTCTCTGGATGGCCAGAGGGGGAAGTGCTGGTGTGTGACGTCGTGGAATGGAAAAAAGATTGTGGGATCGAGTGAACTACCCACAGATGCTGAGTGCCCTCAGGAGCttaatcactgatcacacaaccacacacacattcaggccCTAAGAAACTCTTCCACTCATGGACTATttccacacacatatacatacagaacAATATGCCACTGATTTCTTTTCtactttctatttatttattgtagccTACATGGTTTTGTTTTATACAGGTACACTGTTATAAATTAGTGAATATTAGTTCACTAAACccaccaaaagaaagaaaatcttttcattttttctcatttctgaaaGGATTctttattaatatgtttatatttacttaatacatccatgcatatttatttaaactgaatGTATTCATATAATTGTTGGGGTGAGAATATTTATACCTTATGccttattattgttattatttttgtatggtgtataaatgtatatgttcattgtgtttttatcaGTGTCAGTTGTCTTATCTTTCCAACAAACTGTTGGTAGGAAtcttaaatggaaaaaagcacTGCATGACCAAACCACATTGTCACTGCATATAGCTTTCCATGCAATTTCTGTAGTTACACGattgacatttttttgtcttatttctttTACACTATTGCACAACTATGTGAAGAAGATAAAAGCTTTCACAATTCTCTATTTTGTTCTGCAGTGCATGATGGGTATTGGTCTTCATATCTTCTGAAACGGGTAACTACCTGTTCCTACCTCTGTTTTTGAAGATttattgtgtctgtgtgatttCTGAGAGACTTTGCTTTTGCCAGTGTGGCTTTTTGTCCATGGACTTAGGACCACTTAAGTTTGTATTGGTGGATGTACAATGTTATAAtggtatatatattatatatgtgtgcctttttaataaattgtggGGGAAAATGTC

Function

NR:

description
insulin-like growth factor binding protein-1a precursor

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
K23578 IGFBP1; insulin-like growth factor-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944681.2 True 1766 mRNA 0.46 4 5958431 5961185

Neighbor

gene id symbol gene type direction distance location
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding upstream 12945 5904694 ~ 5945486 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding upstream 70872 5875188 ~ 5887559 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding upstream 90418 5863591 ~ 5868013 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 101875 5844033 ~ 5856556 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 382861 5542956 ~ 5575570 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding downstream 107422 6068607 ~ 6075045 (+)
trappc8 trappc8 coding downstream 129241 6090426 ~ 6127902 (+)
dsc2l NA coding downstream 253556 6214741 ~ 6230552 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding downstream 500543 6461728 ~ 6504131 (+)
aqp4 LOC108257544,LOC108414838 coding downstream 661742 6622927 ~ 6629974 (+)
LOC117599801 NA non-coding upstream 139365 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 150515 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 152843 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 154091 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 224131 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 276529 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 381078 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 461487 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 752742 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 873222 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 156738 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 979031 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1348830 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1620132 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1648502 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 174735 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1051557 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1816412 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2082201 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2527462 8488647 ~ 8534500 (+)

Expression


Co-expression Network