mcm3l (mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457)


Basic Information

Item Value
gene id mcm3l
gene name mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6068607 ~ 6075045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944687.2
GTGAAAAAGCATGCTGAGTAGAGAGGTGCCAAATCGTTTGTTGTGTGAGCTGTATTTCGGTATAGTATTGAGGGAAAATGGATGGTGGCTTTGAAGATCTTGAGCTACGAGAGGCACAGAGGGAATACCTGGACTTTTTGGATGATGATCAAGACCAGGGTGTGTACCATGAGAAAGTCAGAAGTATGGTGTCTGAGGGACAGTCTCgggtaatcatcaacattaatGACCTGCGGCGAAGGAATGAAAAGCGAGCCAAAGAACTTCTGAAGAATGCCTTTGGTGAGCTGGTTGCATTCCAGAGAGCTCTGAAGGACTTGGTGGCCTCCATTGATGCAACGTATGCCAAACAGTTTGATGAGTTTCATGTTGGTTTTGAGGGCAGCTTTGGGAACAAACATGTCTCCCCTCGCACTCTTAGTGCCCGGTTTCTGGGAAATCTTGTTTGTGTGGAGGGCATTGTTACCAAGTGTTCACTGGTCAGGCCAAAGATCATGCGCAGTGTTCATTACTGTCCTGCCACTAAGAAAACCTTGGAAAGGAAATATACTGATCTGACTTCACTGGATGCATTCCCTTCAAGTGCCATCTACCCCACCAAGgatgATGAGAATAATCCATTGGAAACAGAGTTTGGGTTGTGCTGCTATAAGGATCACCAGACTCTGACCATCCAGGAGATGCCAGAGAAAGCTCCTGCTGGGCAACTTCCCCGCTCAGTTGACATAATTTCTGATGATGATCTTGTGGACAAAGTTAAGCCAGGCGATCGTGTACAGATAGTTGGTGTGTACCGGTGTTTACCTGCTAAACAAGGAGGATTTACCTCAGGAACCTTCAGAACTATACTGTTAGCCAACAATGTCAAGCTGATGAGCAAAGAAATTGTTCCCACGTTTTCTGCTGATGATGTTGCCAAGATCAAAAAATTCTGCAAAACTCACTCTAAGgatgtCTTTGAGTACCTAAGTCGATCGCTAGCTCCCAGCATCCATGGCCATGAATATATAAAGAAAGCCATCCTCTGTCTGCTGCTGGGAGGAAATGAGACCAACCTAGAGAACGGCACTCGAATCAGAGGCGACATCAACATCCTGCTTATAGgtgaCCCATCAGTTGCTAAATCTCAGTTGCTGAGGTATGTCTTGTTCACAGCACCAAGAGCCATTCCTACCACCGGACGAGGCTCGTCTGGGGTGGGTCTAACTGCTGCGGTTACCACTGATCAAGAGACAGGTGAGCGCCGGTTAGAGGCAGGTGCCATGGTCCTTGCTGACAGAGGGGTTGTGTGTATTGATGAGTTTGACAAGATGTCTGACATGGATCGCACAGCCATCCATGAGGTGATGGAACAGGGGAGAGTCACCATAGCTAAAGCTGGGATCCAGGCCAGGCTGAATGCTCGCTGTAGTGTGTTGGCTGCTGCTAACCCAGTGTATGGAAGGTATGACCAGTATAAAACCCCTATGGAGAACATTGGACTGCAAGATTCCCTACTCTCTCGATTTGATTTGCTCTTCATCGTTCTGGATCAGATGGATTCAGAGAGTGATCGAGAGATTTCGGAGCATGTGTTGCGCATGCACAGATACAGACCCCCGGGGGAGCAGGAAGGAGCAGCGATGCCATTGGGAAGCACAGTGGACGTGTTTGCCACAGAGGACCCAAACATCACAGAGGCCACTGAGCAGGAGCTGCAGATCTATGAAAAAAAGGACAACGTCCTCCATGGCCACAGGAagaaaaaGGAAAAGATTGTCACCATGGAGTTTATCAGAAAATATATCCATGTGGCTAAGCTAGTGAAACCGGTTCTGACTCAGGAGGCTTCGGACTACATAGCCGAGGAATACACCAAACTGAGAAGCCACGACCAAGTCAATAACGACTTGGCAAGGACAATGCCCGTCACAGCACGTGCCCTAGAGACTATGATCAGGTTGGCTACAGCCCATGCTAAAGCCCGCATGAGTAAAACGATTGAGTTGGGAGATGCAGAGGCTGCTCTGGAGCTCATGCAATTTGCCTACTTCAAAAAGATTCTGGAGAAGAATAAGAAGAGGAAGCTTCCTGAAGATGGTGTGGACACAGAGATGGATACGACTCAGAGCCAGGAGACCCAAAGTCAGAGAAGTGTCAGGAAACGTTCTCGTGTATCTAAAGATGACATGGATTCAGCAATGGCAGAAGACTCTGATGACCCATACAACTTTACAGAAGATGAAAACACCCAACCCAGCCAACCAACCAGGCCAGTGTCTCAGAGGAGTAGCCAAAGGAAGAAGACTGACATCAGTCAAGACAGAATGAAGGTTTTCAAGGCAGCCCTCCTGAAAGCATTTAAAGTGACCAGGTCTCAGTCTGTGCCAATTCCTGAGCTTCTCACTCACGTTAACAAAGGCCAGTCTGAAGAATTTGACCAGCAGGAGGTGCAATTACTTTTGGAGCGCATGCAGGATGATAACCAGGTCATGGTGTCTGAGGACGTGGTCTTCCTCATCTGATAAAACAACGGTCTCTAGATGTGATCATGGAATTGTGATATTGTTGTATATCCTTATGTATTATTGTCTGTAGTGTTCATTgttagtaattaataaatagtttGAGCACTTA
>XM_026944689.2
TAGAGAGGTGCCAAATCGTTTGTTGTGTGAGCTGTATTTCGTATTGAGGGAAAATGGATGGTGGCTTTGAAGATCTTGAGCTACGAGAGGCACAGAGGGAATACCTGGACTTTTTGGATGATGATCAAGACCAGGGTGTGTACCATGAGAAAGTCAGAAGTATGGTGTCTGAGGGACAGTCTCgggtaatcatcaacattaatGACCTGCGGCGAAGGAATGAAAAGCGAGCCAAAGAACTTCTGAAGAATGCCTTTGGTGAGCTGGTTGCATTCCAGAGAGCTCTGAAGGACTTGGTGGCCTCCATTGATGCAACGTATGCCAAACAGTTTGATGAGTTTCATGTTGGTTTTGAGGGCAGCTTTGGGAACAAACATGTCTCCCCTCGCACTCTTAGTGCCCGGTTTCTGGGAAATCTTGTTTGTGTGGAGGGCATTGTTACCAAGTGTTCACTGGTCAGGCCAAAGATCATGCGCAGTGTTCATTACTGTCCTGCCACTAAGAAAACCTTGGAAAGGAAATATACTGATCTGACTTCACTGGATGCATTCCCTTCAAGTGCCATCTACCCCACCAAGgatgATGAGAATAATCCATTGGAAACAGAGTTTGGGTTGTGCTGCTATAAGGATCACCAGACTCTGACCATCCAGGAGATGCCAGAGAAAGCTCCTGCTGGGCAACTTCCCCGCTCAGTTGACATAATTTCTGATGATGATCTTGTGGACAAAGTTAAGCCAGGCGATCGTGTACAGATAGTTGGTGTGTACCGGTGTTTACCTGCTAAACAAGGAGGATTTACCTCAGGAACCTTCAGAACTATACTGTTAGCCAACAATGTCAAGCTGATGAGCAAAGAAATTGTTCCCACGTTTTCTGCTGATGATGTTGCCAAGATCAAAAAATTCTGCAAAACTCACTCTAAGgatgtCTTTGAGTACCTAAGTCGATCGCTAGCTCCCAGCATCCATGGCCATGAATATATAAAGAAAGCCATCCTCTGTCTGCTGCTGGGAGGAAATGAGACCAACCTAGAGAACGGCACTCGAATCAGAGGCGACATCAACATCCTGCTTATAGgtgaCCCATCAGTTGCTAAATCTCAGTTGCTGAGGTATGTCTTGTTCACAGCACCAAGAGCCATTCCTACCACCGGACGAGGCTCGTCTGGGGTGGGTCTAACTGCTGCGGTTACCACTGATCAAGAGACAGGTGAGCGCCGGTTAGAGGCAGGTGCCATGGTCCTTGCTGACAGAGGGGTTGTGTGTATTGATGAGTTTGACAAGATGTCTGACATGGATCGCACAGCCATCCATGAGGTGATGGAACAGGGGAGAGTCACCATAGCTAAAGCTGGGATCCAGGCCAGGCTGAATGCTCGCTGTAGTGTGTTGGCTGCTGCTAACCCAGTGTATGGAAGGTATGACCAGTATAAAACCCCTATGGAGAACATTGGACTGCAAGATTCCCTACTCTCTCGATTTGATTTGCTCTTCATCGTTCTGGATCAGATGGATTCAGAGAGTGATCGAGAGATTTCGGAGCATGTGTTGCGCATGCACAGATACAGACCCCCGGGGGAGCAGGAAGGAGCAGCGATGCCATTGGGAAGCACAGTGGACGTGTTTGCCACAGAGGACCCAAACATCACAGAGGCCACTGAGCAGGAGCTGCAGATCTATGAAAAAAAGGACAACGTCCTCCATGGCCACAGGAagaaaaaGGAAAAGATTGTCACCATGGAGTTTATCAGAAAATATATCCATGTGGCTAAGCTAGTGAAACCGGTTCTGACTCAGGAGGCTTCGGACTACATAGCCGAGGAATACACCAAACTGAGAAGCCACGACCAAGTCAATAACGACTTGGCAAGGACAATGCCCGTCACAGCACGTGCCCTAGAGACTATGATCAGGTTGGCTACAGCCCATGCTAAAGCCCGCATGAGTAAAACGATTGAGTTGGGAGATGCAGAGGCTGCTCTGGAGCTCATGCAATTTGCCTACTTCAAAAAGATTCTGGAGAAGAATAAGAAGAGGAAGCTTCCTGAAGATGGTGTGGACACAGAGATGGATACGACTCAGAGCCAGGAGACCCAAAGTCAGAGAAGTGTCAGGAAACGTTCTCGTGTATCTAAAGATGACATGGATTCAGCAATGGCAGAAGACTCTGATGACCCATACAACTTTACAGAAGATGAAAACACCCAACCCAGCCAACCAACCAGGCCAGTGTCTCAGAGGAGTAGCCAAAGGAAGAAGACTGACATCAGTCAAGACAGAATGAAGGTTTTCAAGGCAGCCCTCCTGAAAGCATTTAAAGTGACCAGGTCTCAGTCTGTGCCAATTCCTGAGCTTCTCACTCACGTTAACAAAGGCCAGTCTGAAGAATTTGACCAGCAGGAGGTGCAATTACTTTTGGAGCGCATGCAGGATGATAACCAGGTCATGGTGTCTGAGGACGTGGTCTTCCTCATCTGATAAAACAACGGTCTCTAGATGTGATCATGGAATTGTGATATTGTTGTATATCCTTATGTATTATTGTCTGTAGTGTTCATTgttagtaattaataaatagtttGAGCACTTA

Function

symbol description
mcm3l Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and double-strand break repair via break-induced replication. Predicted to act upstream of or within DNA duplex unwinding and DNA replication initiation. Predicted to be located in chromosome. Predicted to be part of MCM complex. Predicted to be active in nucleus. Orthologous to human MCM3 (minichromosome maintenance complex component 3).

NR:

description
DNA replication licensing factor MCM3

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02541 MCM3; DNA replication licensing factor MCM3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944687.2 True 2616 mRNA 0.47 19 6068607 6075045
XM_026944689.2 False 2592 mRNA 0.47 18 6069624 6075045

Neighbor

gene id symbol gene type direction distance location
igfbp1a LOC100305121 coding upstream 107422 5958431 ~ 5961185 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding upstream 123121 5904694 ~ 5945486 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding upstream 181048 5875188 ~ 5887559 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding upstream 200594 5863591 ~ 5868013 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 212051 5844033 ~ 5856556 (+)
trappc8 trappc8 coding downstream 15381 6090426 ~ 6127902 (+)
dsc2l NA coding downstream 139696 6214741 ~ 6230552 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding downstream 386683 6461728 ~ 6504131 (+)
aqp4 LOC108257544,LOC108414838 coding downstream 547882 6622927 ~ 6629974 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding downstream 565922 6640967 ~ 6660584 (+)
LOC117599801 NA non-coding upstream 249541 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 260691 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 263019 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 264267 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 334307 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 162669 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 267218 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 347627 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 638882 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 759362 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 266914 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1089207 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1459006 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1730308 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1758678 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 60875 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 937697 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1702552 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1968341 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2413602 8488647 ~ 8534500 (+)

Expression


Co-expression Network