tdh (tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287)


Basic Information

Item Value
gene id tdh
gene name tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7012742 ~ 7019686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944691.2
CTGATCTAcagacacatatatatataacctcCTCTCAGGAGCTGATGCAACCGTGAAGCCCTGTTAAAGAGCAGCGTGGGGAAGCATCTTACACTGCCAGCAATCCAGACACACATTATCATTCAAACTAGCTTATTGGTAACTGAAGATGCCAGTGGTCCGTGCCTTGACTAAGGTGGCTAAGAAAGCCCTTCTGGCCCCTGGTTGTGGCTGTCAGGTTTCAGCAGTGGCTGTGCGCCATGTCAGCTTCTCCCCCCGACAAGTGAGCAATGCATCAGATGCCAGCTTTCACTCTGTGTCCTTTTCTGAAACAGATCATCCAAAGGTCCTTATCACAGGTGGCCTTGGGCAACTAGGTGTTGGGCTTGCCAAATTGTTGAGGAAGAGGTATGGAAAGAACAATGTGATCCTTTCAGATATCAGGAAACCTCCCACCCATGTCTTTCACAGTGGCCCCTTTATCTACTCTGACATTTTGGACTATAAGAACTtgcgagagattgttgtcaacAACCGGATCACCTGGTTGGTGCATTACAGTGCTCTTCTCAGCGCTGTTGGGGAAGCTAACGTGGCCCTGGCCCGGGCTGTCAACATAACTGGTCTTCACAACATCCTGGACATTGCTGCAGAGCATGGGCTTCGATTGTTTGTTCCCAGCACGATTGGTGCCTTCGGCCCAACTTCTCCCCGTAACCCGACTCCTGATCTTTGTGTGCAACGACCTCGTACCATTTATGGTGTCTCCAAGGTCCATGCTGAGCTAATGGGCGAGTACTACCATCACCGGTATGGTCTTGACTTCCGCTGTCTCCGGTACCCTGGTATCATCTCTGCAGATTCCCAGCCTGGTGGTGGTACGACAGATTATGCTGTGCAGATATTCCATGATGCTGTCAAAACTGGCAAGTTTGAGTGCAATTTGAAGCCAGACACGCGACTTCCTATGATGTACATTGACGACTGTTTGCGGGCTACGCTCGAGATCATGGAAGCCCCAGCTGAGACGCTGTCCATGCGCACTTACAACATCAACGCCATGAGCTTCACTCCTGATGAACTGGTGCAGGAGGTCCAGAAACAGCTGCCTGACCTGCAAGTCACATACAAAATTGACCCTGTACGGCAGGCAATAGCTGACAGTTGGCCCATGAACTTTGATGACTCTAATGCGCGCAATGACTGGAGCTGGAAGCATGACTACGACCTGCCGGAGTTGGTTCAGACGATGCTCAACTTCATTGGTTCAGAGTCCCAATTTGCCCAAGCCAACTGAATCAAGTCTAAGAAATAGGAGCTTGTATATACATATTCTAAAGACTGACAGCCATGGAGAACAGAGATCCCTGGTCTGTAAATAATtacttgctctctgtctcttctgtgCCTGGATTATATGGAGGAAAACATATACAGAGATGTACATAAGAGATATATCGCTCATATTAATGGCGACTGTCAATTCTTGAGTGCCCAGAACATGTACTTCCCCccaaatatctttttatttacattttattattttgaagtgATGTaatagtaaaaatgaaaaaaattagacATTGATTAGCTTTGGGCTCTAATATCACGGAAGCTAAGAAGCTCGATTTCCTTTAATTAGTAAAGGAAATATTAAAGCCAATGGCGGATGTTCAGTGGTGGGGCTAAGGGCTGGCTTAGAGTGTAAATTGCTACCCAAGGTTACCCCAGTTATAGAGCAAAAAGTTGTTGCACTGCTTAAACGATTTACCTCGATTTAATGACAAAAACCTGCTATTAGGAAAGTTACCAATCATTAACAACAGTTTGGTGGGTCTGAAGACAACAGTGTGTTAGGCTACTTTTAACTGAGAAATGTCTACTATGAGTTAAATAAGAAAGCAGGAAACTTTAACTTATGACCAACCGAACAAATAATGTCCTGCAAGCTAATCGTTAACCATGcagtaaaaaatacaaatggatAAATCAACACAAGACATTGTCAGATGTCGCAAATTTTTATAGCGAACAACACCAAAATCGCTAGCTAGGCAAAATCTAGCTAAGTGTATTTTATTAGATAACATTATTAGCAAATAGAGGGTGCTTTAAACTTTTTAATGGAAACATTATCATATTAATAACACTGCCCTTTCTGATAAGTAATGGATTTATGGACTACATCAGTAATATCAACTTGTTGTAATATCAACATGTTAATCTGCTTCGtgaaatgaaaagcaaacaAGTGTTAGCAATGATGAATACTAGAAAATGTTAGCTTAACTATCTGATAACAGATTACCACCAAAAGAAGTtacttacttaaaaaaatacaaataagttaattactgtatattgtttaattaattttcaatagGTTTCCCATCACAATAAAATCGCTATGTCTAGCCTGTTCAGTGCACATGTAAAAGTTATGGCTACATGCCTAAGAATATAAATGtactgcatttgcatttggcagatgcccttatccagagcgacatACAGAAATGAAAGGACATTACACTTATCtctttttatacaactgagcagttgagggttaagggccttgctcaagggccctgCAGAGGCAgattggcagtgctggggtttgaacgcACACTCTTACCATCAATAGTCCCAAgacttaaccactgagctaccgttagaatgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtatgcatgtatgcatgcTCATGCATgcgtgtatacgtgtgtgtatgtatgtaaaatggAAGCAGGGGCCAGCATAAGTAATAgtagaattttcttttttttcctttcctccaCCTCTTGTGcactatttatctatttatttagcttttcttTCCTTACAAGCAAaatagcttctttttttttttatctcttgctCCAATAGCTActtaatgtgtttgtattttttttttaaatgatatggACACTGTTTTCCATATAAACACTTATCTTTTATGTTTTCTATATGAGCTTGCCATGTCAATCATacctttttgtatttaaaatgttaggGCAGCCTCTTTACTTAGCAACACATTTGGTGATCATAAAATGTCTGTGATCAAATCATTTTTCCTCAGTTATGCTGGAATGAGTTGGTTATGTCTTGACTCGTCATATTTGCAAATTTCAGCAACTGCTTTGAATTTCTTGATGAGTGACAGTCTCCTGAGTTGCTGCTAGATTATTTTTCAAGAGATATTTCAAGAACAATAAAGCTTCAGTTCGAAATCTCAATACTACTGATGAGAAACGGGTGCTAGAGCTTTGGTGTTAACGTTCACAAACCATACACTGATtgcaacaacagcaataataaagacattttatgaCTCAA
>XR_004580167.1
CTGATCTAcagacacatatatatataacctcCTCTCAGGAGCTGATGCAACCGTGAAGCCCTGTTAAAGAGCAGCGTGGGGAAGCATCTTACACTGCCAGCAATCCAGACACACATTATCATTCAAACTAGCTTATTGGTAACTGAAGATGCCAGTGGTCCGTGCCTTGACTAAGGTGGCTAAGAAAGCCCTTCTGGCCCCTGGTTGTGGCTGTCAGGTTTCAGCAGTGGCTGTGCGCCATGTCAGCTTCTCCCCCCGACAAGTGAGCAATGCATCAGATGCCAGCTTTCACTCTGTGTCCTTTTCTGAAACAGATCATCCAAAGGTCCTTATCACAGGTGGCCTTGGGCAACTAGGTGTTGGGCTTGCCAAATTGTTGAGGAAGAGGTATGGAAAGAACAATGTGATCCTTTCAGATATCAGGAAACCTCCCACCCATGTCTTTCACAGTGGCCCCTTTATCTACTCTGACATTTTGGACTATAAGAACTtgcgagagattgttgtcaacAACCGGATCACCTGGTTGGTGCATTACAGTGCTCTTCTCAGCGCTGTTGGGGAAGCTAACGTGGCCCTGGCCCGGGCTGTCAACATAACTGGTCTTCACAACATCCTGGACATTGCTGCAGAGCATGGGCTTCGATTGTTTGTTCCCAGCACGATTGGTGCCTTCGGCCCAACTTCTCCCCGTAACCCGACTCCTGATCTTTGTGTGCAACGACCTCGTACCATTTATGGTGTCTCCAAGGTCCATGCTGAGCTAATGGGCGAGTACTACCATCACCGGTATGGTCTTGACTTCCGCTGTCTCCGGTACCCTGGTATCATCTCTGCAGATTCCCAGCCTGGTGGTGGTACGACAGATTATGCTGTGCAGATATTCCATGATGCTGTCAAAACTGGCAAGTTTGAGTGCAATTTGAAGCCAGACACGCGACTTCCTATGATGTACATTGACGACTGTTTGCGGGCTACGCTCGAGATCATGGAAGCCCCAGCTGAGACGCTGTCCATGCGCACTTACAACATCAACGCCATGAGCTTCACTCCTGATGAACTGGTGCAGGAGGTCCAGAAACAGCTGCCTGACCTGCAAGTCACATACAAAATTGACCCTGTACGGCAGGCAATAGCTGACAGTTGGCCCATGAACTTTGATGACTCTAATGCGCGCAATGACTGGAGCTGGAAGCATGACTACGACCTGCCGGAGTTGGTTCAGACGATGCTCAACTTCATTGGTTCAGAGTCCCAATTTGCCCAAGCCAACTGAATCAAGTCTAAGAAATAGGAGCTTGTATATACATATTCTAAAGACTGACAGCCATGGAGAACAGAGATCCCTGGTCTGTAAATAATtacttgctctctgtctcttctgtgCCTGGATTATATGGAGGAAAACATATACAGAGATGTACATAAGAGATATATCGCTCATATTAATGGCGACTGTCAATTCTTGAGTGCCCAGAACATGTACTTCCCCccaaatatctttttatttacattttattattttgaagtgATGTaatagtaaaaatgaaaaaaattagacATTGATTAGCTTTGGGCTCTAATATCACGGAAGCTAAGAAGCTCGATTTCCTTTAATTAGTAAAGGAAATATTAAAGCCAATGGCGGATGTTCAGTGGTGGGGCTAAGGGCTGGCTTAGAGTGTAAATTGCTACCCAAGGAAAGTTACCAATCATTAACAACAGTTTGGTGGGTCTGAAGACAACAGTGTGTTAGGCTACTTTTAACTGAGAAATGTCTACTATGAGTTAAATAAGAAAGCAGGAAACTTTAACTTATGACCAACCGAACAAATAATGTCCTGCAAGCTAATCGTTAACCATGcagtaaaaaatacaaatggatAAATCAACACAAGACATTGTCAGATGTCGCAAATTTTTATAGCGAACAACACCAAAATCGCTAGCTAGGCAAAATCTAGCTAAGTGTATTTTATTAGATAACATTATTAGCAAATAGAGGGTGCTTTAAACTTTTTAATGGAAACATTATCATATTAATAACACTGCCCTTTCTGATAAGTAATGGATTTATGGACTACATCAGTAATATCAACTTGTTGTAATATCAACATGTTAATCTGCTTCGtgaaatgaaaagcaaacaAGTGTTAGCAATGATGAATACTAGAAAATGTTAGCTTAACTATCTGATAACAGATTACCACCAAAAGAAGTtacttacttaaaaaaatacaaataagttaattactgtatattgtttaattaattttcaatagGTTTCCCATCACAATAAAATCGCTATGTCTAGCCTGTTCAGTGCACATGTAAAAGTTATGGCTACATGCCTAAGAATATAAATGtactgcatttgcatttggcagatgcccttatccagagcgacatACAGAAATGAAAGGACATTACACTTATCtctttttatacaactgagcagttgagggttaagggccttgctcaagggccctgCAGAGGCAgattggcagtgctggggtttgaacgcACACTCTTACCATCAATAGTCCCAAgacttaaccactgagctaccgttagaatgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtatgcatgtatgcatgcTCATGCATgcgtgtatacgtgtgtgtatgtatgtaaaatggAAGCAGGGGCCAGCATAAGTAATAgtagaattttcttttttttcctttcctccaCCTCTTGTGcactatttatctatttatttagcttttcttTCCTTACAAGCAAaatagcttctttttttttttatctcttgctCCAATAGCTActtaatgtgtttgtattttttttttaaatgatatggACACTGTTTTCCATATAAACACTTATCTTTTATGTTTTCTATATGAGCTTGCCATGTCAATCATacctttttgtatttaaaatgttaggGCAGCCTCTTTACTTAGCAACACATTTGGTGATCATAAAATGTCTGTGATCAAATCATTTTTCCTCAGTTATGCTGGAATGAGTTGGTTATGTCTTGACTCGTCATATTTGCAAATTTCAGCAACTGCTTTGAATTTCTTGATGAGTGACAGTCTCCTGAGTTGCTGCTAGATTATTTTTCAAGAGATATTTCAAGAACAATAAAGCTTCAGTTCGAAATCTCAATACTACTGATGAGAAACGGGTGCTAGAGCTTTGGTGTTAACGTTCACAAACCATACACTGATtgcaacaacagcaataataaagacattttatgaCTCAA

Function

symbol description
tdh Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; neural rod; and pancreas. Orthologous to human TDH (L-threonine dehydrogenase (pseudogene)).

NR:

description
PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008743 L-threonine 3-dehydrogenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944691.2 True 3371 mRNA 0.41 9 7012742 7019686
XR_004580167.1 False 3291 misc_RNA 0.41 10 7012742 7019686

Neighbor

gene id symbol gene type direction distance location
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 9112 6987109 ~ 7003630 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 101554 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 119389 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 144711 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 164209 6833386 ~ 6848533 (+)
pinx1 LOC107589051 coding downstream 4321 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 34272 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 76455 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 99005 7118691 ~ 7147134 (+)
znf513a LOC108257870 coding downstream 189001 7208687 ~ 7219656 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 29938 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 73123 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 78882 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 178044 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 285228 6713927 ~ 6727514 (+)
G291109 NA non-coding downstream 38697 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 200620 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 241364 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 384742 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 469622 7489308 ~ 7520858 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 852702 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1211049 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2033342 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2403141 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2674443 4328832 ~ 4338299 (+)
atp5mpl NA other downstream 757911 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1023700 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1468961 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1973827 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 2054342 9074028 ~ 9179173 (+)

Expression


Co-expression Network