echdc2 (echdc2,LOC107669145)


Basic Information

Item Value
gene id echdc2
gene name echdc2,LOC107669145
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4425634 ~ 4432355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944692.2
CAGGTCTCCATGGTGATGTGAGGAAGTGTACACAAACGGAAAGTAGATTAAGTAACAAACTCCTTCCTACACGGACTTTAACACTGCTTTGGAAGCTCGGGATGTGATTTGTAGCTACATTTCCGAAAAACAGACTTCAGTTACAGAAGGTTAAGACGACAGACTACCAGACAGGACATGAGCGTGTTTGGGAAGTTAGCTGGAGGAGTTCATGCGGTCGGCAGAAGTCATGCTGAACTACTGCACAGGCTGCTTTCTGCTCCTCAGCGCTCACTGCCCGGCTACATGACTGCATCTGACAGGAAGAAGTGCTTTAGTCGGGGGTTTAGCGCTGTGCCGAACCGAGACGCTGCTGAAGTGGACCTCAGTCGTCTGGAAGGTGAAGACCATGGCATTGTGGAGGTTCTGATGCGTCGGGAACGGGCGCGGAACTCTCTGGGTCGTGTGTTTGTGGCTCAGATGCGAGAGCTGGTGTCAGGGCTGCACCATGACGCAGCCGTGCGTGTGGTGATCTTTAGGAGTCTGGTGCCTGGAGTCTTTTGTGCAGGGGCTGATCTGAAGGAGAGAGCCCAGATGAGCAACTCTGAAGCTGAGCATTTTGTTCATGGACTCCGTTCACTAATGAATGAAATAGCGGCGTTGCCCATGCCAACCATCGCTGCAGTGGACGGCTTCGCTCTAGGGGGTGGGCTGGAGCTGGCGCTGGCGTGTGACCTCCGGACAGCGGCATACACTGCTCAGATGGGCCTGATTGAAACCACGCGGGGACTCCTTCCAGGGGCGGGGGGCAGTCAGCGTTTGCCACGGGCAGTGGGATTTGCTGTGGCCAAGGAGCTGATCTTTACTGGGCGGCGTGTGGGGGGGGAACAGGCTCTACACCTGGGAATAGTGAACCGTGCCGTCCCACAAAACCAGAGCGGAGATGCAGCTCATAGAGAGGCTCTCAACCTGGCCCAGGAAATCCTCCCTCAGGCTCCGTTCGCAGTGCGCATGGCCAAGGAAGCCATGAGCCGAGGAATAGAGGTGGACATCGCTTCAGGAATGGCCATCGAGGGGATGTGCTACGCCCGGGTTATTCCAACAAAAGACAGGCAAGAGGGAATGGCAGCTTTTATAGAGAAAAGGCAGCCCAGATACACTGGAGAATAAACAGACCCAGATCACACACAGGCTCTTTAAAGAGCTGTTTTGTGATTCCAGTCTTACTGGATCATTAGACTACTTCCTAATATCAAAACAAACAGTACATATTGGCCACATACTGGTTaggtaagtaaggaataaaacacttggggggtgtgctgttctaggaaaacaatcaacaacacaGTGGTGTGATGGCATTACCAACACAAAGTCATTTTCcagtaaacctgtgatttgccttgtagctgaactactgtcagagctgtgctaggacagtatagaaaattaatcaacaccttttgaccaatcagaatcaagaattcagcagcatcatgctaataataaacattatatagtatatgttGAGAATCTTTACTTCAACCATGATGATCACATTCAGATATTAATTACAGCACTGCCTGATTAACaatattatgtattttgtggaaaaaaaaaaaaaaaaaagctttggtATCAATTACAGTTTGGTATGGTCCTCCATAACAACCATAATACAGTTGATTTACAGATGCATTTTTAGCCTCTGTATTCATACTGTTTACGGTAACACTGTAATTctgattaataaacatttattaccAAAA

Function

symbol description
echdc2 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in brain; otic vesicle; pronephros; and sensory system. Orthologous to human ECHDC2 (enoyl-CoA hydratase domain containing 2).

NR:

description
PREDICTED: enoyl-CoA hydratase domain-containing protein 2, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944692.2 True 1751 mRNA 0.48 9 4425634 4432355

Neighbor

gene id symbol gene type direction distance location
LOC113545214 LOC108257527 coding upstream 5801 4407768 ~ 4419833 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding upstream 29514 4366765 ~ 4396120 (+)
trnad-guc_22 NA coding upstream 75755 4349808 ~ 4349879 (+)
trnad-guc_19 NA coding upstream 87660 4337903 ~ 4337974 (+)
trnad-guc_18 NA coding upstream 92005 4333558 ~ 4333629 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding downstream 15292 4447647 ~ 4450922 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding downstream 20961 4453316 ~ 4557487 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding downstream 128806 4561161 ~ 4581781 (+)
LOC117599796 NA coding downstream 209438 4641793 ~ 4642356 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 384332 4816687 ~ 4822011 (+)
G289521 NA non-coding upstream 62546 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 72833 4350748 ~ 4352801 (+)
G289615 NA non-coding upstream 90675 4265383 ~ 4334959 (+)
G289619 NA non-coding upstream 95362 4319461 ~ 4330272 (+)
LOC117599777 NA non-coding upstream 181683 4239026 ~ 4243951 (+)
G289831 NA non-coding downstream 880 4433235 ~ 4434790 (+)
G289866 angptl1,angptl1a non-coding downstream 97573 4529928 ~ 4539840 (+)
LOC117599674 NA non-coding downstream 191787 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 272307 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 298730 4731085 ~ 4731312 (+)
trnad-guc_17 NA other upstream 87335 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 115705 4248330 ~ 4309929 (+)
G289531 NA other upstream 355267 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 437511 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 442940 3943494 ~ 3982694 (+)
LOC113545190 NA other downstream 168700 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 509596 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1303118 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1703565 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2580387 7012742 ~ 7019686 (+)

Expression


Co-expression Network