XLOC_005270 (si:dkey-26g8.5)


Basic Information

Item Value
gene id XLOC_005270
gene name si:dkey-26g8.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16919411 ~ 16923162 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010132
ATTCAAAAAGATTTGCTTGCGAAATTCTTCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTGCATAAGTGCAGTGTTCACTGCTCCATCTATAGACATCCAGTTAGACGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACCTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCACCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTTCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACAGGGCAATCAAGGGTGTAATGGAGGCATCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGCTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATCCCCAGAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGAATCTATTATGAGAGAGCATGTACCAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACGTTTATGGTTTctctattttaatgtgtttttatttcttctcTTTTCATCAAATTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTAGAAAATtgcatttttcttgtttttttatttatgcttatttATCCAAGAATGAGACTTCTGTACTGTATCTATTTGACCTGCAAAtggataaatataaaattttctgGCATGGCAAAA

Function

symbol description
si:dkey-26g8.5 Predicted to enable cysteine-type peptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human CTSL (cathepsin L) and CTSV (cathepsin V).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-19 Predicted to enable cysteine-type peptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human CTSL (cathepsin L) and CTSV (cathepsin V).

Ensembl:

ensembl_id ENSDARG00000089750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010132 True 1288 mRNA 0.43 8 16919411 16923162

Neighbor

gene id symbol gene type direction distance location
XLOC_005269 BX000534.2 coding downstream 17652 16901645 ~ 16901759 (-)
XLOC_005268 ctslb coding downstream 21271 16895644 ~ 16898140 (-)
XLOC_005267 si:dkey-269i1.4 coding downstream 42275 16874645 ~ 16877136 (-)
XLOC_005266 zgc:174154 coding downstream 154660 16758972 ~ 16764751 (-)
XLOC_005265 BX322603.1 coding downstream 172864 16743052 ~ 16746547 (-)
XLOC_005271 zgc:174855 coding upstream 15645 16938807 ~ 16951646 (-)
XLOC_005272 NA coding upstream 19042 16942204 ~ 16943248 (-)
XLOC_005273 NA coding upstream 41494 16964656 ~ 16966808 (-)
XLOC_005274 ifit12 coding upstream 65958 16989120 ~ 16990896 (-)
XLOC_005275 BX000534.1 coding upstream 74044 16997206 ~ 16998442 (-)
XLOC_005263 BX465840.2 non-coding downstream 264616 16654681 ~ 16654795 (-)
XLOC_005260 BX465840.1 non-coding downstream 320554 16598743 ~ 16598857 (-)
XLOC_005258 FO704724.2 non-coding downstream 347102 16572195 ~ 16572309 (-)
XLOC_005289 dre-mir-2192 non-coding upstream 783630 17706792 ~ 17706901 (-)
XLOC_005291 NA non-coding upstream 798639 17721801 ~ 17727540 (-)

Expression


Co-expression Network