LOC113546780


Basic Information

Item Value
gene id LOC113546780
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2133158 ~ 2142181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946812.2
tggcaccaggatgcactatgggaagaaggcaagctggcagtgtgatgctctggacaatgttctgctgggaagccttgattttaatgttacggctgaaCGGTGTACATATTTGAATCTCTATCTGTATTCGAATGGTCTAGACTGGAGGAATGTTTTTGCTTGCTGCAGGATAAGTGCAGATGGGATCTAGATCTAATCTGCCCTTCCTGCCAAGGAATAGTGCGCTTCCTGTtcctatctgtatttgtttagaacacattggGCTTTCatttatcatgctggatatgaatgaatttattggtAAATTGTTCATAGGAGCATTTACATATGAGAATTTGCTGTTCATGAAAAATCCCTTAAGTTTGGAAAAAAGGTTCATATCCTACAAGAGCTTCTGAGAGTGTGTCAATTCAAGCATAGGAAGACTAAGTAATGAAAACCTCCACTGATCAGCTTCAAACCATATTAATGCATGGATTAGtgcaattttatttacagatgATTTGAGCAAGTTTAAATGgcctttttaacattttaactgcACACAAATGTGAAATGACAATTTTGGGAACCcagttttgtttcatattaatgccattaattACAGAAGAAATAAACATGAGAAGAATAATTAAAGAAAGCCAGCCAGgacaaatccataaatgaagGTAAGACTAATCATTCAGTTAAGGCAAAGGAAATGCCACTGTACAAAAGGAGGAAGGGCCGGCCTGTGCATATGGTCGCTGTAAACCGCAGAGCTGATCTGGTATCAGACTACTGGAAGATTTATTGCACGTCTTGCTTATGAGGGAATGGATATTTAGAAACCGTTATTGTATTCTATGGAAGACAAAAGCTGGCGTATATCTCAGTTCCGCATTGGTGCGTGAGAGGCTGGAGAGACTTCTGGCTGACAGCTGCTGAGATATTTAAATCAGGGAAGCAAAGAAGTTTCcttgtgtgatgtgcttggtgtccaCGATCACCTAGAGACCCCAAAAAATATGTCACTGACAATAGATGAAAAGTTTGACATTGCACTCACCAACCAAAACAGTGCGAAGtacaacaaatataaaaccACACTTGAGAATTTGattgATAGTAGTTACCGAAACATGGCTGGCTACAAACCTGGCTCTGTGAGAATTCTCAGGTTCAGgCCTGGCAGCATAAATGTAGACTTTACAATTACCACAACCACGAATGAACTTGATTTTAGATCAGCAAACTCAGAGCTCTCTCAAGTACTTACTGCAAATGGATTTAAAgttgctgaaaatgcttttgctTATAGtgTGGAGTATGACCTAGTCCAAAGCACAGGAAAAATATATCCTCTGCAGGATGTGCAGTTAAATTGTACTCTTCCAACTGGAGTAATGGGAAACATTCAATGGCGAGTGGATGGAGTTGATCCTTTTctaaattctgtaaaatataaCATCCTTAATAACAACCGCACTCTTAAAGTAATAAGTGTGAGTGCAGTTGACAGTGGTGTATATGAATGCATAACCGAAAACAATTCACTGAGATTTATCCAGTGGCAAAGAATTGTGATTCAGCCATATCCCAGTATCCAAGTAGATCCTGataaagtgtttaaatgtgatGATTTGTCCATACCGCTACAGTGCTGTGCCTACAGCAGCTATACAATTGAGTGGACCAAGGACTCCCTGTCTCCACTGACACCTCCAGGTCCAGGGTCCGGCTGCATCACGTACAACTTTGCTGTCCAGAAACAGGATTGTGAGGCTGGtgaaaaacaagtcattttcaCATGTCGACTTTCAGAGAACAGCCTGAGTGTGTTAAGTTATAGCTCAAAGAACATATCAATCACTATAACCAAAAAAGCATTCTACTGCTCTGATAGCAGCTTCGGCGTTGGGACTGTAAACCAGACAGCGTTCAGACAATGTGAGGGAGATGAGACTGGCATTAAGTGGGCAGTGTGTAATAAAACAGGCCAGTGGAGCATAATATCTAACAACTGCACCCTTCGTGTCATCCAGAACCTGGCAGATAAAGCTGAATATTTAGACGTAGAAGAAGTGCCACTGTTTGCTGCTAATCTCAGTAACACTGCAGAAGAGAATTCTGAGAATATAACCACAGTTCCTGTCAATCTCTTGAAAGTTGTTGATTTACTCAGCAGACTTGCTAATATttcaaaaacacaatcatttaCAGTGGACAAAAACACGATGgagGATTTCCTCAAAACTGTGGCTGTCATTACATCAGAGAAAGCCCAGGAAACATGGAAGAGTTTCAACGATGACAATACAAACCAGAATGCTAGCACTGTGCTTCTTCAGTCAATCCAAAGTATTGGAAGCAGTCTCTCAAATGAGAATTTTTCCATATCAACATCAAATATCCAGCTCATAAGGAATTTGAATACCTTAATCCATGAAATGTTTAGCCCAAATTCTACTACTCAGATAGGCTTTCCAGACACTAGCAGATCATTCCCAGTCACCGTCATTATTTTCTCTGAGCTTAACAGTGTGTTACCTGTTCGAAGTGCAACCTACAGTGACGGCAGTGAAACTCACACCAGCATCAATGGAGACGTAGCTGTGATTGAAGGAGAGTCGAGAGTGAACAATGTCTCCCTTTTTTTTGATGTTAAAAATAAGTCATTAGGAAACCCACAGTGTGTCTTTTGGAACTTTAACCTTTTAAATGGAACTGGTGCATGGGACTCTGCTGGGTGTGAACTAAAGCCACTAAGTAATCAAACTAAAAGGTTAACATGCGAGTGCAACCACACAACCTCTTTTTCTATCCTGATGTCACCAGTTATCCCGGATAATGAAACCTTGGCCTATATAACGTACATTGGTGTATGTATTTCAATGGGCAGCTTGGTTTTGTGCCTTATCTTTGAAAGCCTTATCTGGAAATCAATGTCAAAAACTGATACATCTTACATGCGCCACGTCTCCATCGTCAACATCGCTCTGTCCCTGCTGGTTGCGGACATATGCTTCATTATTGGAGCAGCAATTGGGAAAAAAGGGCAGAAGACACCAGTGGGTCCCTGCAGTACAGTGACATTCTTCATCCACTTCTTTTACCTCGCTCTCTTCTTCTGGATGCTGCTGTCTGCGCTCTTGCTTCTCTACCGCACGGTCGTAGTGTTCTCCAGGATGTCCAGGACCGTGATGATGACCATAGCCTTTACTGTAGGCTATGGAGCCCCATTAATAATTGCCATTGTTACTATTGCAGCAACATCTGGAAATGGAGGATACATTCAAGAAGACAATACTTGTTGGCTCAACTGGTATAAAACTAAGGCTATACTGGCGTTCGTGATTCCAGCCCTGGCCATTGTGGCTATAAATCTCCTGGTGCTTATAATAATTGTATGTAAGATACTGAGGAGTGGAACTGGTGCCACCATTCAACGAGATGAGAAACATGCCATAGTAATGATTGCCAGGTGTGTGAGCATTTTAACACCTCTCTTTGGTCTAACTTGGGGATTTGGGATTGGGACCATGGTGTCATCAGCCTTTGGGATTCACTTGGTGTTTGCAATCCTTAATTCACTACAGGGCTTCTTTATTTTAGTTCTTGGAACTCTGATGGACAATAAGattTTTGGGGTGCTGCTAGGAAGGTGGAAGCAGAAGAACATTAGCTCTAACCGTACTGGGAGCATCATTGAAGGCTCATCACCTTCTAAAGTAAGGGGTTTCTACCACATATTCCCAAGGAGATATGTGTACCATGTATCGACTGCTGCTTATTCTTCACATGTACCGTCAAGCAACACGGAAACTTTTAAGTTCACTGAAAAATAATGCATCTTACAGCACAGCTGTCACTGCCCATGCAAATAGAGCGTACCATCCACGTGACATCTATGACTTGACGAGTCAattccatgtaaaaaaaaaaaaatgtatctttaATGCATGATCTAATTTAAGAACCAGAAatgatttattacattaaagGAATCctcacacaattattatttaatatttgtgatttacatttcattatacCAACTGATTTAACTTCATAAATAAACAGCTATTGCAGTGC
>XR_004580079.1
tggcaccaggatgcactatgggaagaaggcaagctggcagtgtgatgctctggacaatgttctgctgggaagccttgattttaatgttacggctgaaCGGTGTACATATTTGAATCTCTATCTGTATTCGAATGGTCTAGACTGGAGGAATGTTTTTGCTTGCTGCAGGATAAGTGCAGATGGGATCTAGATCTAATCTGCCCTTCCTGCCAAGGAATAGTGCGCTTCCTGTtcctatctgtatttgtttagaacacattggGCTTTCatttatcatgctggatatgaatgaatttattggtAAATTGTTCATAGGAGCATTTACATATGAGAATTTGCTGTTCATGAAAAATCCCTTAAGTTTGGAAAAAAGGTTCATATCCTACAAGAGCTTCTGAGAGTGTGTCAATTCAAGCATAGGAAGACTAAGTAATGAAAACCTCCACTGATCAGCTTCAAACCATATTAATGCATGGATTAGtgcaattttatttacagatgATTTGAGCAAGTTTAAATGgcctttttaacattttaactgcACACAAATGTGAAATGACAATTTTGGGAACCcagttttgtttcatattaatgccattaattACAGAAGAAATAAACATGAGAAGAATAATTAAAGAAAGCCAGCCAGgacaaatccataaatgaagGTAAGACTAATCATTCAGTTAAGGCAAAGGAAATGCCACTGTACAAAAGGAGGAAGGGCCGGCCTGTGCATATGGTCGCTGTAAACCGCAGAGCTGATCTGGTATCAGACTACTGGAAGATTTATTGCACGTCTTGCTTATGAGGGAATGGATATTTAGAAACCGTTATTGTATTCTATGGAAGACAAAAGCTGGCGTATATCTCAGTTCCGCATTGGTGCGTGAGAGGCTGGAGAGACTTCTGGCTGACAGCTGCTGAGATATTTAAATCAGGGAAGCAAAGAAGTTTCcttgtgtgatgtgcttggtgtccaCGATCACCTAGAGACCCCAAAAAATATGTCACTGACAATAGATGAAAAGTTTGACATTGCACTCACCAACCAAAACAGTGCGAAGtacaacaaatataaaaccACACTTGAGAATTTGattgATAGTAGTTACCGAAACATGGCTGGCTACAAACCTGGCTCTGTGAGAATTCTCAGGTTCAGgCCTGGCAGCATAAATGTAGACTTTACAATTACCACAACCACGAATGAACTTGATTTTAGATCAGCAAACTCAGAGCTCTCTCAAGTACTTACTGCAAATGGATTTAAAgttgctgaaaatgcttttgctTATAGtgTGGAGTATGACCTAGTCCAAAGCACAGGAAAAATATATCCTCTGCAGGATGTGCAGTTAAATTGTACTCTTCCAACTGGAGTAATGGGAAACATTCAATGGCGAGTGGATGGAGTTGATCCTTTTctaaattctgtaaaatataaCATCCTTAATAACAACCGCACTCTTAAAGTAATAAGTGTGAGTGCAGTTGACAGTGGTGTATATGAATGCATAACCGAAAACAATTCACTGAGATTTATCCAGTGGCAAAGAATTGTGATTCAGCCATATCCCAGTATCCAAGTAGATCCTGataaagtgtttaaatgtgatGATTTGTCCATACCGCTACAGTGCTGTGCCTACAGCAGCTATACAATTGAGTGGACCAAGGACTCCCTGTCTCCACTGACACCTCCAGGTCCAGGGTCCGGCTGCATCACGTACAACTTTGCTGTCCAGAAACAGGATTGTGAGGCTGGtgaaaaacaagtcattttcaCATGTCGACTTTCAGAGAACAGCCTGAGTGTGTTAAGTTATAGCTCAAAGAACATATCAATCACTATAACCAAAAAAGCATTCTACTGCTCTGATAGCAGCTTCGGCGTTGGGACTGTAAACCAGACAGCGTTCAGACAATGTGAGGGAGATGAGACTGGCATTAAGTGGGCAGTGTGTAATAAAACAGGCCAGTGGAGCATAATATCTAACAACTGCACCCTTCGTGTCATCCAGAACCTGGCAGATAAAGCTGAATATTTAGACGTAGAAGAAGTGCCACTGTTTGCTGCTAATCTCAGTAACACTGCAGAAGAGAATTCTGAGAATATAACCACAGTTCCTGTCAATCTCTTGAAAGTTGTTGATTTACTCAGCAGACTTGCTAATATttcaaaaacacaatcatttaCAGTGGACAAAAACACGATGgagGATTTCCTCAAAACTGTGGCTGTCATTACATCAGAGAAAGCCCAGGAAACATGGAAGAGTTTCAACGATGACAATACAAACCAGAATGCTAGCACTGTGCTTCTTCAGTCAATCCAAAGTATTGGAAGCAGTCTCTCAAATGAGAATTTTTCCATATCAACATCAAATATCCAGCTCATAAGGAATTTGAATACCTTAATCCATGAAATGTTTAGCCCAAATTCTACTACTCAGATAGGCTTTCCAGACACTAGCAGATCATTCCCAGTCACCGTCATTATTTTCTCTGAGCTTAACAGTGTGTTACCTGTTCGAAGTGCAACCTACAGTGACGGCAGTGAAACTCACACCAGCATCAATGGAGACGTAGCTGTGATTGAAGGAGAGTCGAGAGTGAACAATGTCTCCCTTTTTTTTGATGTTAAAAATAAGTCATTAGGAAACCCACAGTGTGTCTTTTGGAACTTTAACCTTTTAAATGGAACTGGTGCATGGGACTCTGCTGGGTGTGAACTAAAGCCACTAAGTAATCAAACTAAAAGGTTAACATGCGAGTGCAACCACACAACCTCTTTTTCTATCCTGATGTCACCAGTTATCCCGGATAATGAAACCTTGGCCTATATAACGTACATTGGTGTATGTATTTCAATGGGCAGCTTGGTTTTGTGCCTTATCTTTGAAAGCCTTATCTGGAAATCAATGTCAAAAACTGATACATCTTACATGCGCCACGTCTCCATCGTCAACATCGCTCTGTCCCTGCTGGTTGCGGACATATGCTTCATTATTGGAGCAGCAATTGGGAAAAAAGGGCAGAAGACACCAGTGGGTCCCTGCAGTACAGTGACATTCTTCATCCACTTCTTTTACCTCGCTCTCTTCTTCTGGATGCTGCTGTCTGCGCTCTTGCTTCTCTACCGCACGGTCGTAGTGTTCTCCAGGATGTCCAGGACCGTGATGATGACCATAGCCTTTACTGTAGGCTATGGAGCCCCATTAATAATTGCCATTGTTACTATTGCAGCAACATCTGGAAATGGAGGATACATTCAAGAAGACAATACTTGTTGGCTCAACTGGTATAAAACTAAGGCTATACTGGCGTTCGTGATTCCAGCCCTGGCCATTGTGGCTATAAATCTCCTGGTGCTTATAATAATTGTATGTAAGATACTGAGGAGTGGAACTGGTGCCACCATTCAACGAGATGAGAAACATGCCATAGTAATGATTGCCAGGGCTTCTTTATTTTAGTTCTTGGAACTCTGATGGACAATAAGattTTTGGGGTGCTGCTAGGAAGGTGGAAGCAGAAGAACATTAGCTCTAACCGTACTGGGAGCATCATTGAAGGCTCATCACCTTCTAAAGTAAGGGGTTTCTACCACATATTCCCAAGGAGAT

Function

GO: NA

KEGG:

id description
K08453 ADGRF1, GPR110; adhesion G-protein coupled receptor F1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946812.2 True 4074 mRNA 0.41 14 2133158 2142181
XR_004580079.1 False 3629 misc_RNA 0.41 13 2133158 2141637

Neighbor

gene id symbol gene type direction distance location
LOC117599673 NA coding upstream 1887 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 13241 2092475 ~ 2119917 (+)
si:dkey-1j5.4 LOC108257701 coding upstream 217298 1912614 ~ 1915860 (+)
lbr lbr coding upstream 231165 1892769 ~ 1901993 (+)
enah enah coding upstream 243965 1824985 ~ 1889193 (+)
adgrf3b adgrf1 coding downstream 9053 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 20250 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 47578 2189759 ~ 2212201 (+)
fzd3a fzd3 coding downstream 193889 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 294517 2436698 ~ 2439040 (+)
G288225 NA non-coding upstream 59277 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 61882 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 137479 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 198375 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 434991 1695908 ~ 1698167 (+)
LOC117599781 NA non-coding downstream 5034 2147215 ~ 2151238 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 73396 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 183477 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 306241 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 364388 2506569 ~ 2515375 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 111895 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 773042 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 868526 1259176 ~ 1264632 (+)
G287892 NA other upstream 889486 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 1234748 807193 ~ 898410 (+)
cnstb LOC108257742 other downstream 342855 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1801313 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1845871 3988052 ~ 3988123 (+)
G289531 NA other downstream 1912276 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 2106149 4248330 ~ 4309929 (+)

Expression


Co-expression Network