grcc10 (c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086)


Basic Information

Item Value
gene id grcc10
gene name c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2951771 ~ 2955866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946817.2
CACCGATCAGTGCAACACCCGGAACTGTCGTGTAtttgttgcttgtttttgtcGGTGTAGCGAACATTGTATTTTCCTCACCCGTATTTCGCCAAACCGCTCCTACCGCACTATGATTGGTTAATATCATCCTGGGTTCTgtgatgtgattggttcatAGTTGCTAAACGCTCCGTGATTAGCCAATAAGCTCGGCAGTCGTTCAGCGCAGGCGGAGAGTTGTTGGAATACGGGTGGGGAAAAGAAAATAACGCGTAGCAAACCGCTTGCTGTAACTTTAAAGTCgtttgtttgttaatttacagatttttactATAAAGATAACCCAGAATGGCATCAGCTCCAGCCCAGCAGCCCACACTGACAAtagagcaagccagagTGGTGCTGAGTGAGGTGATCCAGGCCTTCTCTGTGCCTGAGAATGCCTCTCGGATGGAGGAGGCGAGGGAAAGTGCCTGTAATGACATGGGTAAGATGCTCCAGCTGGTTCTGCCTGTGGCTACACAAATCCAGCAGGAGGTGATCAAGGCCTACGGCTTCAATAACGAAGGAGAGGGTGTGCTGAAATTTGCCAGACTGGTGAAGATGTACGAATCTCAGGACCCAGAGATCGCTGCCATGTCGCTCAAGCTTAAGTCTCTTCTCCTGCCACCTCTGTCGACTCCGCCCATCGGTGGTGGAATTCCAGCATCATAACTTCAGCCAAACCAATATCCACATCACAGGGGTTCAAAACATCTACATCAGACGTGTCCGATCTTATACACAgagggccggtgtgggtgcaggggTTCATTCCagtcaagcaggagccacatctGATTCCCCTTTTTTGATCAGTGGATCTTGGCTTTCAGTCGACTCAGGTGTAGCTTCTGCTTGgatggaatgaaaacctgcacccacaccggccctttcctTATAAGATTGGACACCACTGATCTACAGCCTCACCGTTACTGTCCTTCATCAGAAATACTGACATATTTTCCAGACTAtaagacaataaaacacaccTCCATGGATTCATAATCAGTGTATTCGCAGCTGTCAGTCACTACTTTGTGGCTAGTGTTTTGATTAGTAGGAGAAGTACAGCGTAGCCTGGCAGCGGCTGACATTTAAGGCACGTTTTCACCGCAGGGAATTTCAGCATGTTTATATCAAAAGAACAaacatcaggggaaaaaaagttgtttCACAGTCTGCGCACTTttcccatttacatttacatttatggcatttggcggACGCCCTTATCACAGCGACTTACaattctcatttatacaactgagcagttgagggttaagggtcttgctcaagggtccagcAGTGGCAGCCCACGTTCTCTTCCGTTCCACTCGTAGTTGTTGCAGTGAAAATTCCAGAATGACGATGCAAATGCAACTTCAACTTCGCTTCATTTCGAGTCGCAATGCCTGCTATAAAgagcacaaataaataaatcacgcAAATTATAGTCTGGAAAATCCACTGTTCAAATCCTGAACTTCTCACATTCCCATGGCATTCTAACTTTTGTATTACCATTTCATATTCTCTCTCGTATTTATCTGAATTTCTCTGTGTATATAGTacaaagacttttgcacaaacCTGGAAATCTGTGGGAAATAACAAATCTGAAGAtctgtgtgaaagctgtttCTGGTTAAGACTAAAGCGATATCTCACTCTGATGTAGGTTTAAATCCTACAGCTGCTGTGGAAATTCCAGCAGTGCAAAGATCTCGAGAAACGGTTATGCCAGGAATAAAATATATGGTAtgtataaacatatttgttttagtttttgcaTGTTCCTAGCAAATAATAGAAAACTCTCTCACCCAAATTGTTTGCATAAATAGTTTCCTCAATCCACATCCAGGTCTTCAGTGATATCAATCAAAATCTAGGACATAGCGTGTGTTACTGTAATGTATAAACATGAAATATATCTTCACCGTCAAGCTGTATGGCTGTAACATTATAggggcagccatcttggaacCCTGGAGGCTTAAAAAGATTTTGTTTGTGATGGACTTGAGATATTTGTTAGCAGCATTAGGCTCAAAGCTCAAggtcagaagaagaagaaattgaCCATATGAGGAACATATGAAACCGTATGTTGTCATTTTGACCAAATTGTTGCTTTTAAATAGCTTAATATGTGCATGAGATCTAAATTAGAGCAGATCCAGGGTAAGGAGAATGTGCTTCACAGTCTTCATACAGCAAAATGTCTGCCAAAGTTGGTGGCTGAGTTTCGTTTCGTCGTGCATAAGACCGCTGTTCAGTAACATCTACCAACCTTCAAACTCAACAGGAGTTCAGCAAAACACTAGTATTCatactttccctttttttcccctcattgctttttatctttttttttttttttttttttttttacctttgtttacatttgtgtgtaaattttcaTTGTGCAATAAAAACTTTAATCAGGATCAACACTC
>XM_034313621.1
GTTATAGGTATATTTGTAGAGATAACCCAGAATGGCATCAGCTCCAGCCCAGCAGCCCACACTGACAAtagagcaagccagagTGGTGCTGAGTGAGGTGATCCAGGCCTTCTCTGTGCCTGAGAATGCCTCTCGGATGGAGGAGGCGAGGGAAAGTGCCTGTAATGACATGGGTAAGATGCTCCAGCTGGTTCTGCCTGTGGCTACACAAATCCAGCAGGAGGTGATCAAGGCCTACGGCTTCAATAACGAAGGAGAGGGTGTGCTGAAATTTGCCAGACTGGTGAAGATGTACGAATCTCAGGACCCAGAGATCGCTGCCATGTCGCTCAAGCTTAAGTCTCTTCTCCTGCCACCTCTGTCGACTCCGCCCATCGGTGGTGGAATTCCAGCATCATAACTTCAGCCAAACCAATATCCACATCACAGGGGTTCAAAACATCTACATCAGACGTGTCCGATCTTATACACAgagggccggtgtgggtgcaggggTTCATTCCagtcaagcaggagccacatctGATTCCCCTTTTTTGATCAGTGGATCTTGGCTTTCAGTCGACTCAGGTGTAGCTTCTGCTTGgatggaatgaaaacctgcacccacaccggccctttcctTATAAGATTGGACACCACTGATCTACAGCCTCACCGTTACTGTCCTTCATCAGAAATACTGACATATTTTCCAGACTAtaagacaataaaacacaccTCCATGGATTCATAATCAGTGTATTCGCAGCTGTCAGTCACTACTTTGTGGCTAGTGTTTTGATTAGTAGGAGAAGTACAGCGTAGCCTGGCAGCGGCTGACATTTAAGGCACGTTTTCACCGCAGGGAATTTCAGCATGTTTATATCAAAAGAACAaacatcaggggaaaaaaagttgtttCACAGTCTGCGCACTTttcccatttacatttacatttatggcatttggcggACGCCCTTATCACAGCGACTTACaattctcatttatacaactgagcagttgagggttaagggtcttgctcaagggtccagcAGTGGCAGCCCACGTTCTCTTCCGTTCCACTCGTAGTTGTTGCAGTGAAAATTCCAGAATGACGATGCAAATGCAACTTCAACTTCGCTTCATTTCGAGTCGCAATGCCTGCTATAAAgagcacaaataaataaatcacgcAAATTATAGTCTGGAAAATCCACTGTTCAAATCCTGAACTTCTCACATTCCCATGGCATTCTAACTTTTGTATTACCATTTCATATTCTCTCTCGTATTTATCTGAATTTCTCTGTGTATATAGTacaaagacttttgcacaaacCTGGAAATCTGTGGGAAATAACAAATCTGAAGAtctgtgtgaaagctgtttCTGGTTAAGACTAAAGCGATATCTCACTCTGATGTAGGTTTAAATCCTACAGCTGCTGTGGAAATTCCAGCAGTGCAAAGATCTCGAGAAACGGTTATGCCAGGAATAAAATATATGGTAtgtataaacatatttgttttagtttttgcaTGTTCCTAGCAAATAATAGAAAACTCTCTCACCCAAATTGTTTGCATAAATAGTTTCCTCAATCCACATCCAGGTCTTCAGTGATATCAATCAAAATCTAGGACATAGCGTGTGTTACTGTAATGTATAAACATGAAATATATCTTCACCGTCAAGCTGTATGGCTGTAACATTATAggggcagccatcttggaacCCTGGAGGCTTAAAAAGATTTTGTTTGTGATGGACTTGAGATATTTGTTAGCAGCATTAGGCTCAAAGCTCAAggtcagaagaagaagaaattgaCCATATGAGGAACATATGAAACCGTATGTTGTCATTTTGACCAAATTGTTGCTTTTAAATAGCTTAATATGTGCATGAGATCTAAATTAGAGCAGATCCAGGGTAAGGAGAATGTGCTTCACAGTCTTCATACAGCAAAATGTCTGCCAAAGTTGGTGGCTGAGTTTCGTTTCGTCGTGCATAAGACCGCTGTTCAGTAACATCTACCAACCTTCAAACTCAACAGGAGTTCAGCAAAACACTAGTATTCatactttccctttttttcccctcattgctttttatctttttttttttttttttttttttttacctttgtttacatttgtgtgtaaattttcaTTGTGCAATAAAAACTTTAATCAGGATCAACACTC

Function

symbol description
grcc10 Predicted to be involved in post-embryonic development. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Temtamy syndrome. Orthologous to human C12orf57 (chromosome 12 open reading frame 57).

NR:

description
protein C10 isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946817.2 True 2489 mRNA 0.42 4 2951771 2955866
XM_034313621.1 False 2190 mRNA 0.42 4 2952170 2955866

Neighbor

gene id symbol gene type direction distance location
niban1a LOC108258050 coding upstream 2194 2931354 ~ 2949577 (+)
kifap3a kifap3,kifap3a coding upstream 25541 2902093 ~ 2926230 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding upstream 204707 2726388 ~ 2747064 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding upstream 249301 2684373 ~ 2702470 (+)
znf395b znf395 coding upstream 286806 2656769 ~ 2664965 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding downstream 11335 2967201 ~ 2976245 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding downstream 128783 3084649 ~ 3100761 (+)
slain2 slain2 coding downstream 145528 3101394 ~ 3128120 (+)
slc10a4 slc10a4 coding downstream 179867 3135733 ~ 3141717 (+)
zar1 zar1 coding downstream 187017 3142883 ~ 3144734 (+)
G288834 NA non-coding upstream 34961 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 81105 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 186716 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 323453 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 343398 2581309 ~ 2608373 (+)
G288839 NA non-coding downstream 22467 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 236241 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 323540 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 385535 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 408362 3364228 ~ 3368671 (+)
cnstb LOC108257742 other upstream 455719 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 809590 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 930508 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1591655 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1687139 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 987628 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1032186 3988052 ~ 3988123 (+)
G289531 NA other downstream 1098591 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1292464 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1372966 4328832 ~ 4338299 (+)

Expression


Co-expression Network