rasl11b (rasl11b)


Basic Information

Item Value
gene id rasl11b
gene name rasl11b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3399115 ~ 3402675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946820.2
CGCTCGCGCTCGCCTCAGTGCGCTGATTGCTGTGAAGGGGAGAGTAACAGGTAGAGCAGCTCGTTTACTGTAACTGTTATTGCAGTTGTATGCGGGATTACCAGACCAAGCGCTCAGAGGAGACATTTGTGGCATTTGTGTTTCGAATGACGGAGTGGATATTGCGCAGTTTTTCTGTTTGGACTTTGTTTTTCCTCGGTTAAAATCTGTTAATTGTGACAATGCGCCTGATGCAGAACATGTCGACTATAGTGGAGTGCCCCGGCTCGGAGTGCCTGTCCAAGCGCCTCATCAAGCTGGCCGTGCTCGGGGGCAGTGGAGTGGGCAAAACCGCGCTCATTGTTCGCTTCCTCACCAAGCGCTTCATTGGCGACTACGAGAGAAATGCAGgcAGCCTGTATTCCAGAGAAGTCCAGATCGACGGAGAACAAGTGGCCATTCAAGTGCAGGATACACCTGGAGTGCAGGTAAACGCCAATGGCCTGAGCTGCACTGAGCACGTGAGACACTCCATCCAGTGGGCCGACGCAGTGGTCATGGTCTATTCTGTGACAGATGGTCACAGCTTCGACCTCATTAGTCAGCTCCATCAGCTTGTGAGCCATGTGTATGCTGATAGACCGGCACCACCAATTATCCTGCTGGCCAATAAGGCGGACATGGTGCACGTGAGGCGGGTGGAGGCGCAGCAGGGCCCGGCGCTGGCCTTGGCACTCGGTTGTTCTTTCTACGAGGTGTCAGCCAGCGAAGACTACAGTCAGGTGCACGGAGCTTTCCACAGACTCTGCACAGAGCTTGCCAAAAGACAGGTGCCATTTAGCACTAATGCAAACGCAGCTTCAGCCAGCAACGAGAAGAAGAGGTCACCTCTTATCCCCAGACCCAAATCACCCAACATGCAGGACCTGAAGAGGCGCTTCAAGCAGGTGCTGTCGGCCAAAGTGCGCACAGTCACCTCTGTGTGAGGAAGAGAGTGAGGGATGTGGCCCGGATGTGGGGCTAGACAAGAGAGAAGAGCGCAGGGTTGAGTGGCAGGGCGACAATCCAAAAGGCAGAGGCTCACCGAAGTAAAGATTTGGTCTTGCTTTTGAGCTCAACTTTTGATCAGCAGGCCAGATCTAAAACAAAGGGGTGCTGAACTATGACCTCTGAAATCGGTGACCTCTGACTTGTGAACTTTGACCATCTTGGTGGCGGAGGCTAAGCCACCTGTGCTGCTGTGACGGACTTGTATGGATACAGCAGGATACTGAGAACTCTGGTGTCTAAAATTGCCTTAAAGATGAAGAATGCAAAAAGACGCTTGGACTAAATAAACACTAacgtacgcacacacactgcgttATATCTGTAGACAACTTCACCTGGCAACAGAGCTTGTGAAGGACAGAGGGCTGGGTATTTTTATCGACGCAGACGTTTTCTTTTTGTCAAGGCTTTCAGCTCTCAGCAGAAACAAACTGAAAGCAGCCATTGTTAAAGGAACGAGGCACTAGAGCTGAAGGGCACAagcagtctgtgtgtttttgtgttaaacTCTTCAGTGccaatttgtacaaattttttttaaatgcactttaCATCATGCCCCAGGGTTAAGGCTTGAtctaatttattgttttgtgattgaaaataaaatatatttgactTTGAA

Function

symbol description
rasl11b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within mesendoderm development. Predicted to be located in membrane. Is expressed in several structures, including axis; central nervous system; presumptive ectoderm; shield; and tail bud. Orthologous to human RASL11B (RAS like family 11 member B).

NR:

description
PREDICTED: ras-like protein family member 11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048382 mesendoderm development biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07853 RASL11B; Ras-like protein family member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946820.2 True 1654 mRNA 0.50 4 3399115 3402675

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 84652 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 121147 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 137065 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 254381 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 257398 3135733 ~ 3141717 (+)
fip1l1a LOC108257999 coding downstream 152062 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 315431 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 328967 3731642 ~ 3753431 (+)
kita kit coding downstream 378715 3781390 ~ 3808749 (+)
LOC117599795 LOC107568747 coding downstream 476147 3878822 ~ 3885661 (+)
G289164 NA non-coding upstream 15233 3383677 ~ 3383882 (+)
G289145 NA non-coding upstream 29261 3364238 ~ 3369854 (+)
LOC113546783 NA non-coding upstream 30444 3364228 ~ 3368671 (+)
LOC113546886 NA non-coding upstream 31343 3367648 ~ 3367772 (+)
LOC113546887 NA non-coding upstream 33713 3365278 ~ 3365402 (+)
G289240 NA non-coding downstream 91276 3493951 ~ 3494334 (+)
G289351 NA non-coding downstream 220389 3623064 ~ 3687916 (+)
G289363 NA non-coding downstream 308026 3710701 ~ 3739214 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 440440 3843115 ~ 3844679 (+)
G289515 NA non-coding downstream 539599 3942274 ~ 3974015 (+)
cnstb LOC108257742 other upstream 903063 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1256934 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1377852 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2038999 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2134483 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 540819 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 585377 3988052 ~ 3988123 (+)
G289531 NA other downstream 651782 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 845655 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 926157 4328832 ~ 4338299 (+)

Expression


Co-expression Network