LOC113546789


Basic Information

Item Value
gene id LOC113546789
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2646073 ~ 2654271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946825.2
GACTGACTCTGCAGTCTGGGAAGAGTAAGTATGCAGCCAAAACACTGACAGACGAGTCACGCAGGGTGGTGGCAGTGACAGGCAAAGCTGATCCTGATGTCACCGAGGCTACAGTCATATCAGGGGCTGTATGGAGTGCTATGGCTGCAGACTTGGGTTGGATGTCAGGCCACACTTCCTCCTTAGACATCACCATTATCTCCATCCTCTTCCTCATTGGCTACATCGCACTCTACACACTCTGCACCACCTGTTTCAGTGAGACTCCAGAGTGTCCAGAGGAGAAAGAAATACCctcatctctctcactgagTGTGAATCTAGGAGATCACCAGAGAACCATGAACAATGTGGAtgTTCTAAGCTCTATGGCACACAGCAGTATGCCACAGGTTCCTGCTGGGCCTCAGCACAAGAACCACACCATTGTGTACAGCCAACAAACTAATATTTATTCCCATAACAGAGCCAAATCGGACAGTTACTTTAGCCAGCAAATGACACCCAGGATTCCAGATACCCTTGCGTTCTCTGTCAGATCCACAGGTGCAGTGTCTCCAGGACTTCCTGCACTTCCACCAATTCCACCAATTTTCTATTTGACCACAGTCCAGATGGAACCACCAAAGGAGTCTTCTTCAGGACAGCAACCTAAGACAGTCAAAACTGTGTGGGACTTTGTCACACTTCCAGAAGATCAGCCAAATATGAACAGTGGGTTTACTGAGATAGACAGTGAGGAGCATCCCTATGCCTGTTTAGACAATGTTAGAGTCAGTGGACCTTCATCACCCTCCCActgtgatgaagctgatgagGACCGATGGGAGAGTGAGAGTCCCTACCACATGGTGACAGAATGGATAGAACCTACTCCTACTTGTGACTTAGCCACGCTCCTTCCTGTGACAGACAGTGAAAAGGCAGAGGAGTTGGAATTTCTTTTCCCACCTCTCCCAGCTGTCCAGGATGACCAGCCATTAATTAACACAGACAGAACTGCCATCTATGCAGCGGtgaacaggaaaaacaaaagtCAGAAAAGCAACAAAGAAGCTCCTGTTGTACAAGACACAATGGTGTTAGATGAGGACGAGGCCCCGCCTGTTCCAGAAAAAATATTTGACTAGCAAATAGAAGTTGGACTAAGTAATGTAtgttaatgtatatatattggcagtaaataaatacaaatactta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946825.2 True 1200 mRNA 0.47 6 2646073 2654271

Neighbor

gene id symbol gene type direction distance location
paqr8 LOC100304624 coding upstream 1805 2640280 ~ 2644268 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding upstream 27193 2612201 ~ 2618880 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 171470 2454793 ~ 2474603 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 207033 2436698 ~ 2439040 (+)
fzd3a fzd3 coding upstream 291475 2336070 ~ 2354598 (+)
znf395b znf395 coding downstream 2498 2656769 ~ 2664965 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding downstream 30102 2684373 ~ 2702470 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding downstream 72117 2726388 ~ 2747064 (+)
kifap3a kifap3,kifap3a coding downstream 247822 2902093 ~ 2926230 (+)
niban1a LOC108258050 coding downstream 277083 2931354 ~ 2949577 (+)
G288740 NA non-coding upstream 17755 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 37700 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 130698 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 192699 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 319784 2325658 ~ 2326289 (+)
G288789 NA non-coding downstream 109999 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 215325 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 216091 2870362 ~ 2870666 (+)
G288839 NA non-coding downstream 324062 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 537836 3192107 ~ 3193930 (+)
cnstb LOC108257742 other upstream 150021 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 503892 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 624810 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1285957 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1381441 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1289223 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1333781 3988052 ~ 3988123 (+)
G289531 NA other downstream 1400186 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1594059 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1674561 4328832 ~ 4338299 (+)

Expression


Co-expression Network