znf395b (znf395)


Basic Information

Item Value
gene id znf395b
gene name znf395
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2656769 ~ 2664965 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946828.2
GGAGGCTGATCCGCGGAGTCGGTGCACGGAGTCGGGCTGTCAGGACACCCAGGAATCAGCGCGTGACGTCACACGTCGGCCAGCGCACACCTCCGAAGAGAATAAACCAGAGAAGTATTGTTTCCAGTTTAGTTGTTTAAGAGGTTGACGCGTAAACACAGGCGAAGGTGTGAGTGAGATCCGGTGTGTGTTCGGTTCTTCTCCCGAGCTGGAGCCTGAGTCCATCCAGCAGAGCCTCACTGAGGGGGTGTGTGCCCTAAAAACACTCCAGTGCAGTTTGCGAAGACCTACTTGTCTGTTTTCACACCACAAAGACCCAGTTGTTACGGATTTAACACACCTGAACTGTATTTGCAGATTTTTTGAGCGCCTGAGCCTACTGTTTGGTCCGGCCcattgggagagagagagagagagagagagagagagagagggtaggGCACAACATGGCAGCTGTGAAGTCCCAGGCAGGACCGGGGGCCATGCAGTCGACAGCAGGGCGAAAAAAGGAAGGCCTGGTCAGACGTTGTGTTCAGGAGAACGCAGACGTACAGAAACACCAGCAGAACTCCATCTTACAGTCGTCACCGGGTCTTGGGGAAGAGTGGACTGCCAATTCGGAGCAATCAAACACCCTCCTTTTCTTACAGTCTTCCAATGTCAACCTGCCATACCGGAGTCCTGAATCAGTAGAAATGGATGAGATCATGGCTGCGATGGTCCTCACCAGTCTGTCCTGTAGTCCAGTGATCCAGAGCCCCACACAGAGAGATCCCTTACCACATGGCCCACTGGATGTGGAGTGTGGTGGAGGGGAACTGTCGGACAGTGGCAGCAGCGGCTACTGGAGCTGGGAGCATGGCAGTGTCAGTCCTGCTCCCTCACCGTCCGTCACCGAGACAGAGAGCAGCATGGGACAGCTGGCAGATGAGGGGCTGCACATGGAGCCGGAGCTGGGGGCACGTGACGAGCTGGAGACCAGGCGGTGCAAGATTTCGAGCAGGGGAGCGTATAGGTGTTTGTGGCCAGGCTGCGGCAAAGTGCTGACATCACGGGTTGGGATGAAACGTCACATTCGCATTCTCCATCTGGGTGGGCCAGAGCAATCTCACAGAGAGGAAGATTTTTATTACACCGAGGTCTCCTCAGAGGAAGAGGAACCGACGCCTCCATCTCCTTCTCTGTCACTCACCAGTGGGCCCTGGTCCTCATGCAGCTCCACCCCCAGCCAGCCCACTTCCGCAGAGGCCCCGCCCTCTTCCAGCGCTCTCAGCCAATCCGCCCCCAGCAGTGTGTGGCAGATACACGCGGAACATCTCTACCAGTTGACACATCCTTGTGCACCCATTGAGCTGACCATATCCCCAGACTCTGCTTCCTCCTGTGACTGGACTTCAGCTGGACTCCAGCTGAGACCTCAGATCAGCATGTCACGTAGCCGTTCCATCAGCGTGGGCGAGCAGTGGCTACAGCGGAACAGTGTTCCCTCCAGATCGCACACCGTGAGTGCATCGCCATCCAGGGGCCACTGCTCCATCCGGAAAGGTCGAGGCGAGGCCAAAAAGTGCCGCAAGGTGTACGGTGTGGAGCGCAGGGATCAGTGGTGCAACGCTTGTCGCTGGAAGAAAGCCTGTCAGCGCTTCCCTGACTAAAAACATAAGACTTTTTGAAGCAAGCAAGAATCTCagtctttcctttctttctgtggACTACTCCTGGCACTGTCGAGGACCATGAGAATcccttttttttaccttttgtaCCTGTTTTCCAAAAGGAGCTGAAGGATATTTTCTATGATCTTTTTCTGTGACGTGAGTTCTGGTGATAGCTGTTGAGACTGTGTGACGTGGTACAGTCCTGATCCCTCTGACTTTCTTGTCAACCTATAAAGcaagactttttttctttcattccccAGCAGTCGTGCACTACAACCGCTCTTGAGATTATTGAATTGATTGTCAGTTTTGGTATAAAGTGAACATCTCAAcatttgtattgtttgttttttttatatcctgaAATGTGTACTAGCAAAATGTTAGTCATTGTGTTTCTTtgtactggatttttttttcaacattttttttcacttttttgcgTTTGACTTATGCCCATGTGACAGCACTTCCTTATCAAGTAAAAATGCCACACATGAGGTTAATGGTATATGCAGCTATAAGCAGCTATAACTTATGATTGATTACCAAAGTGCTATTGCAAGTCCCTTGCCATTCTGTGGTACAGTATTaagagttttgtttgtttttttgtgtttttttttttcatctgatgGGTTAAAACCTTGGACAGATTTCAAGAATTTGCTGTTATACCCACATAGTATGCATAAAGAACaggaaagtgttaaaaatgattaaaacacacCTTATACAATATGCACAAGAGAAACTAATGGTTGCATGACAAAGCACAAGAGAAATAGTAAActattttattgata
>XM_034313454.1
AAAGGCTTTACACCTCGAGCTGGCATTGGATGAGTGTGTCCTGTCTGTGGAGTGACTGTGTGgagcttgtttttgtttgctcaTATTTTTTGAGCGCCTGAGCCTACTGTTTGGTCCGGCCcattgggagagagagagagagagagagagagagagagagggtaggGCACAACATGGCAGCTGTGAAGTCCCAGGCAGGACCGGGGGCCATGCAGTCGACAGCAGGGCGAAAAAAGGAAGGCCTGGTCAGACGTTGTGTTCAGGAGAACGCAGACGTACAGAAACACCAGCAGAACTCCATCTTACAGTCGTCACCGGGTCTTGGGGAAGAGTGGACTGCCAATTCGGAGCAATCAAACACCCTCCTTTTCTTACAGTCTTCCAATGTCAACCTGCCATACCGGAGTCCTGAATCAGTAGAAATGGATGAGATCATGGCTGCGATGGTCCTCACCAGTCTGTCCTGTAGTCCAGTGATCCAGAGCCCCACACAGAGAGATCCCTTACCACATGGCCCACTGGATGTGGAGTGTGGTGGAGGGGAACTGTCGGACAGTGGCAGCAGCGGCTACTGGAGCTGGGAGCATGGCAGTGTCAGTCCTGCTCCCTCACCGTCCGTCACCGAGACAGAGAGCAGCATGGGACAGCTGGCAGATGAGGGGCTGCACATGGAGCCGGAGCTGGGGGCACGTGACGAGCTGGAGACCAGGCGGTGCAAGATTTCGAGCAGGGGAGCGTATAGGTGTTTGTGGCCAGGCTGCGGCAAAGTGCTGACATCACGGGTTGGGATGAAACGTCACATTCGCATTCTCCATCTGGGTGGGCCAGAGCAATCTCACAGAGAGGAAGATTTTTATTACACCGAGGTCTCCTCAGAGGAAGAGGAACCGACGCCTCCATCTCCTTCTCTGTCACTCACCAGTGGGCCCTGGTCCTCATGCAGCTCCACCCCCAGCCAGCCCACTTCCGCAGAGGCCCCGCCCTCTTCCAGCGCTCTCAGCCAATCCGCCCCCAGCAGTGTGTGGCAGATACACGCGGAACATCTCTACCAGTTGACACATCCTTGTGCACCCATTGAGCTGACCATATCCCCAGACTCTGCTTCCTCCTGTGACTGGACTTCAGCTGGACTCCAGCTGAGACCTCAGATCAGCATGTCACGTAGCCGTTCCATCAGCGTGGGCGAGCAGTGGCTACAGCGGAACAGTGTTCCCTCCAGATCGCACACCGTGAGTGCATCGCCATCCAGGGGCCACTGCTCCATCCGGAAAGGTCGAGGCGAGGCCAAAAAGTGCCGCAAGGTGTACGGTGTGGAGCGCAGGGATCAGTGGTGCAACGCTTGTCGCTGGAAGAAAGCCTGTCAGCGCTTCCCTGACTAAAAACATAAGACTTTTTGAAGCAAGCAAGAATCTCagtctttcctttctttctgtggACTACTCCTGGCACTGTCGAGGACCATGAGAATcccttttttttaccttttgtaCCTGTTTTCCAAAAGGAGCTGAAGGATATTTTCTATGATCTTTTTCTGTGACGTGAGTTCTGGTGATAGCTGTTGAGACTGTGTGACGTGGTACAGTCCTGATCCCTCTGACTTTCTTGTCAACCTATAAAGcaagactttttttctttcattccccAGCAGTCGTGCACTACAACCGCTCTTGAGATTATTGAATTGATTGTCAGTTTTGGTATAAAGTGAACATCTCAAcatttgtattgtttgttttttttatatcctgaAATGTGTACTAGCAAAATGTTAGTCATTGTGTTTCTTtgtactggatttttttttcaacattttttttcacttttttgcgTTTGACTTATGCCCATGTGACAGCACTTCCTTATCAAGTAAAAATGCCACACATGAGGTTAATGGTATATGCAGCTATAAGCAGCTATAACTTATGATTGATTACCAAAGTGCTATTGCAAGTCCCTTGCCATTCTGTGGTACAGTATTaagagttttgtttgtttttttgtgtttttttttttcatctgatgGGTTAAAACCTTGGACAGATTTCAAGAATTTGCTGTTATACCCACATAGTATGCATAAAGAACaggaaagtgttaaaaatgattaaaacacacCTTATACAATATGCACAAGAGAAACTAATGGTTGCATGACAAAGCACAAGAGAAATAGTAAActattttattgata

Function

symbol description
znf395 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nuclear speck.

NR:

description
zinc finger protein 395-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946828.2 True 2467 mRNA 0.50 10 2656769 2664965
XM_034313454.1 False 2194 mRNA 0.49 10 2657193 2664965

Neighbor

gene id symbol gene type direction distance location
LOC113546789 NA coding upstream 2498 2646073 ~ 2654271 (+)
paqr8 LOC100304624 coding upstream 12501 2640280 ~ 2644268 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding upstream 37889 2612201 ~ 2618880 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 182166 2454793 ~ 2474603 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 217729 2436698 ~ 2439040 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding downstream 19408 2684373 ~ 2702470 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding downstream 61423 2726388 ~ 2747064 (+)
kifap3a kifap3,kifap3a coding downstream 237128 2902093 ~ 2926230 (+)
niban1a LOC108258050 coding downstream 266389 2931354 ~ 2949577 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding downstream 286806 2951771 ~ 2955866 (+)
G288740 NA non-coding upstream 28451 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 48396 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 141394 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 203395 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 330480 2325658 ~ 2326289 (+)
G288789 NA non-coding downstream 99305 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 204631 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 205397 2870362 ~ 2870666 (+)
G288839 NA non-coding downstream 313368 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 527142 3192107 ~ 3193930 (+)
cnstb LOC108257742 other upstream 160717 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 514588 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 635506 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1296653 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1392137 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1278529 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1323087 3988052 ~ 3988123 (+)
G289531 NA other downstream 1389492 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1583365 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1663867 4328832 ~ 4338299 (+)

Expression


Co-expression Network