fip1l1a (LOC108257999)


Basic Information

Item Value
gene id fip1l1a
gene name LOC108257999
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3554737 ~ 3585005 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946854.2
AAACCCTATAGGTCACGTGACGCGCCCAAGCAGCGCGTGTCCTTAGAAACCACACACCGGCTCCAACTTTGACAGCTGCTACCACCTGCTAGTGGCTGCGCCTCAAAAAACACGGCCATTTCTCCCGTACAGTTTGTTTTATCGAAAGTTGTTTGTGCCACAGGGCTTTTCCAGGTGGCCAGTCGCTCACAATGTCAACTGGGGAAACGGAAAAAACGACAGGCTACGCTAGTGGGGATGACGAGGACTGGCTTTACGGAGACAACAACGACGATGATGATGTGGACGATGCCgctggtgatgatgatgacaagaAGACAGAGACTGAAattttcagTGCTTTGGTTGGAGATGTGGAAGGCGCTAATGGAGTGGATAATCAGGATGTTGATAGCGACTCGGACAGTGATGACAACTTGCGCATTACCATTGGCAACATCAAAACCGACAGCATCCAGAGCACTAGCACTCCTGTCAATCTCAAGACCTCAGGCATAACCACTGTGACAGGTGCGAAGGTCAGAGGAGTGGCTCTGGTTGCAGTGGACAGCATCATTGGCACTCCAGCACTGGAGGTGGATGAGGAGTTGGAGGAGAAGCCTTGGAGAAAACCAGGTGCGGACCTGTCAGACTATTTTAACTATGGCTTCAACGAGGACACCTGGAAGGCGTATTGTGACAAACAGAGAAGACTGCGCATGAGTCTAGAGTTCATGACCTTAGGCTCGTCTGACAAAAACATGgGTAGTCATGATGAGCTCGTCTCTAAATCAGATTGCCCCTCCAGGAAGTTGAAAAGCTCCATCGATGTAATCGGAGGGCAAACAGAGACCATCATTCGTGTGGAAGGGCGAAGGCATCACAGCACAGATGGAAGCaacatgcaggtgcAGTCCTCCTCCGAACGGCCCGTGGATGCTGAGCCGCCATCCTCTAAGCTGCCTCCTTTCTTTGCCCCCATCATTCCTCCTCCaccttttcctcttctctccatcaGCACCACTCCTCCTTTTATACAACATCCACCAcGACCGTCTATGAGTGTCCCACCACCTGGTTTTCCACTCCCTCCTGAAGTTCCTTCTCCTCCCTTTACATCAGGCAGGAACAGGGGCAGGAGACACAGGAGAGCAAGCAAACAGAACAAAGACAGTACATCTATTTGCGTCTATTCGCCTGTCAGCAGGAGCTTGCACAGTGGCCATTCAGGAGGAAGCTATGATAGCTGCTGTGCCCCGTTGTATCCCTTTGCTGCAGGTGTGTATCCACATGCTCTGGGGCACATGACCCCTTGGCTGGGCTTGAGTGACCATGCCAAAGTGTGGAAGTATAAAAGCTGCCAGGACaaagagagggaaaaggggAAGGATAGAGAGAGGACCCGGGAACGAGAGCGGGACCGAGAGCTGAAgaaagagcaggagagagagcgCGATCAGGAGAACACACCCTCATTTCCGAGCCGCAGCAGTGACAAAGAGCGTGCATCACGTCACAGGGACCATAGTGatcgggagagagagagacatcggGAACATGATagagaggggagagaaagagaagaccGGCATCGTGACAGAAGACACAGGGACCATAACGAGCGACACAAATCCTCACGCagcAGTAGCAGTCGGAGAAGGCATTCCAGTGATGATGGAGAGAGCCACAGGAGACACAGATACAAGCGCTCCAAACACAACAAGGACAGCACGGACACCGAGTCCACTGACTGACCGGCTACCCAAAAGGGAGAGATCGTACGTCTTAACAAGTTGTCTTAATTATTCACTCTTGTAGGCAGTCAGTGGCTGGAGAGTGACAACATTGTACGTTCATTCGAGCCAAGTAAATTCCAGGCTCATTAGGagctgatttattttcattttaagctGTTATAAGAGACCTAGTTTACAAAACTAATTTATTACCCAGTTTATGACAAGACCAAAGACAAtgaacaaaatcatttttttaatttaagctaATTTATTAGAAGATTacttgaatgaaaaaaagaaacatttttgatTGTTTAGCTAAGatgatttatatttgtgttgtgCCAAAGAATGGTTTTGTTGCGGTATGAAAAcagtattataaataatttggtAAACCA
>XM_026946855.2
AAACCCTATAGGTCACGTGACGCGCCCAAGCAGCGCGTGTCCTTAGAAACCACACACCGGCTCCAACTTTGACAGCTGCTACCACCTGCTAGTGGCTGCGCCTCAAAAAACACGGCCATTTCTCCCGTACAGTTTGTTTTATCGAAAGTTGTTTGTGCCACAGGGCTTTTCCAGGTGGCCAGTCGCTCACAATGTCAACTGGGGAAACGGAAAAAACGACAGGCTACGCTAGTGGGGATGACGAGGACTGGCTTTACGGAGACAACAACGACGATGATGATGTGGACGATGCCgctggtgatgatgatgacaagaAGACAGAGACTGAAattttcagTGCTTTGGTTGGAGATGTGGAAGGCGCTAATGGAGTGGATAATCAGGATGTTGATAGCGACTCGGACAGTGATGACAACTTGCGCATTACCATTGGCAACATCAAAACCGACAGCATCCAGAGCACTAGCACTCCTGTCAATCTCAAGACCTCAGGCATAACCACTGTGACAGGTGCGAAGGTCAGAGGAGTGGCTCTGGTTGCAGTGGACAGCATCATTGGCACTCCAGCACTGGAGGTGGATGAGGAGTTGGAGGAGAAGCCTTGGAGAAAACCAGGTGCGGACCTGTCAGACTATTTTAACTATGGCTTCAACGAGGACACCTGGAAGGCGTATTGTGACAAACAGAGAAGACTGCGCATGAGTCTAGAGTTCATGACCTTAGGCTCGTCTGACAAAAACATGgGTAGTCATGATGAGCTCGTCTCTAAATCAGATTGCCCCTCCAGGAAGTTGAAAAGCTCCATCGATGTAATCGGAGGGCAAACAGAGACCATCATTCGTGTGGAAGGGCGAAGGCATCACAGCACAGATGGAAGCaacatgcaggtgcAGTCCTCCTCCGAACGGCCCGTGGATGCTGAGCCGCCATCCTCTAAGCTGCCTCCTTTCTTTGCCCCCATCATTCCTCCTCCaccttttcctcttctctccatcaGCACCACTCCTCCTTTTATACAACATCCACCAcGACCGTCTATGAGTGTCCCACCACCTGGTTTTCCACTCCCTCCTGAAGTTCCTTCTCCTCCCTTTACATCAGGCAGGAACAGGGGCAGGAGACACAGGAGAGCAAGCAAACAGAACAAAGACAGTACATCTATTTGCGTCTATTCGCCTGTCAGCAGGAGCTTGCACAGTGGCCATTCAGGAGGAAGCTATGATAGCTGCTGTGCCCCGTTGTATCCCTTTGCTGCAGGTGTGTATCCACATGCTCTGGGGCACATGACCCCTTGGCTGGGCTTGAGTGACCATGCCAAAGTGTGGAAGTATAAAAGCTGCCAGGACaaagagagggaaaaggggAAGGATAGAGAGAGGACCCGGGAACGAGAGCGGGACCGAGAGCTGAAgaaagagcaggagagagagcgCGATCAGGAGAACACACCCTCATTTCCGAGCCGCAGCAGTGACAAAGAGCGTGCATCACGTCACAGGGACCATAGTGatcgggagagagagagacatcggGAACATGATagagaggggagagaaagagaagaccGGCATCGTGACAGAAGACACAGGGACCATAACGAGCGACACAAATCCTCACGCagTAGCAGTCGGAGAAGGCATTCCAGTGATGATGGAGAGAGCCACAGGAGACACAGATACAAGCGCTCCAAACACAACAAGGACAGCACGGACACCGAGTCCACTGACTGACCGGCTACCCAAAAGGGAGAGATCGTACGTCTTAACAAGTTGTCTTAATTATTCACTCTTGTAGGCAGTCAGTGGCTGGAGAGTGACAACATTGTACGTTCATTCGAGCCAAGTAAATTCCAGGCTCATTAGGagctgatttattttcattttaagctGTTATAAGAGACCTAGTTTACAAAACTAATTTATTACCCAGTTTATGACAAGACCAAAGACAAtgaacaaaatcatttttttaatttaagctaATTTATTAGAAGATTacttgaatgaaaaaaagaaacatttttgatTGTTTAGCTAAGatgatttatatttgtgttgtgCCAAAGAATGGTTTTGTTGCGGTATGAAAAcagtattataaataatttggtAAACCA
>XM_026946856.2
AAACCCTATAGGTCACGTGACGCGCCCAAGCAGCGCGTGTCCTTAGAAACCACACACCGGCTCCAACTTTGACAGCTGCTACCACCTGCTAGTGGCTGCGCCTCAAAAAACACGGCCATTTCTCCCGTACAGTTTGTTTTATCGAAAGTTGTTTGTGCCACAGGGCTTTTCCAGGTGGCCAGTCGCTCACAATGTCAACTGGGGAAACGGAAAAAACGACAGGCTACGCTAGTGGGGATGACGAGGACTGGCTTTACGGAGACAACAACGACGATGATGATGTGGACGATGCCgctggtgatgatgatgacaagaAGACAGAGACTGAAattttcagTGCTTTGGTTGGAGATGTGGAAGGCGCTAATGGAGTGGATAATCAGGATGTTGATAGCGACTCGGACAGTGATGACAACTTGCGCATTACCATTGGCAACATCAAAACCGACAGCATCCAGAGCACTAGCACTCCTGTCAATCTCAAGACCTCAGGCATAACCACTGTGACAGGTGCGAAGGTCAGAGGAGTGGCTCTGGTTGCAGTGGACAGCATCATTGGCACTCCAGCACTGGAGGTGGATGAGGAGTTGGAGGAGAAGCCTTGGAGAAAACCAGGTGCGGACCTGTCAGACTATTTTAACTATGGCTTCAACGAGGACACCTGGAAGGCGTATTGTGACAAACAGAGAAGACTGCGCATGAGTCTAGAGTTCATGACCTTAGGCTCGTCTGACAAAAACATGgGTAGTCATGATGAGCTCGTCTCTAAATCAGATTGCCCCTCCAGGAAGTTGAAAAGCTCCATCGATGTAATCGGAGGGCAAACAGAGACCATCATTCGTGTGGAAGGGCGAAGGCATCACAGCACAGATGGAAGCaacatgcaggtgcAGTCCTCCTCCGAACGGCCCGTGGATGCTGAGCCGCCATCCTCTAAGCTGCCTCCTTTCTTTGCCCCCATCATTCCTCCTCCaccttttcctcttctctccatcaGCACCACTCCTCCTTTTATACAACATCCACCAcGACCGTCTATGAGTGTCCCACCACCTGGTTTTCCACTCCCTCCTGAAGTTCCTTCTCCTCCCTTTACATCAGGCAGTGGCCATTCAGGAGGAAGCTATGATAGCTGCTGTGCCCCGTTGTATCCCTTTGCTGCAGGTGTGTATCCACATGCTCTGGGGCACATGACCCCTTGGCTGGGCTTGAGTGACCATGCCAAAGTGTGGAAGTATAAAAGCTGCCAGGACaaagagagggaaaaggggAAGGATAGAGAGAGGACCCGGGAACGAGAGCGGGACCGAGAGCTGAAgaaagagcaggagagagagcgCGATCAGGAGAACACACCCTCATTTCCGAGCCGCAGCAGTGACAAAGAGCGTGCATCACGTCACAGGGACCATAGTGatcgggagagagagagacatcggGAACATGATagagaggggagagaaagagaagaccGGCATCGTGACAGAAGACACAGGGACCATAACGAGCGACACAAATCCTCACGCagcAGTAGCAGTCGGAGAAGGCATTCCAGTGATGATGGAGAGAGCCACAGGAGACACAGATACAAGCGCTCCAAACACAACAAGGACAGCACGGACACCGAGTCCACTGACTGACCGGCTACCCAAAAGGGAGAGATCGTACGTCTTAACAAGTTGTCTTAATTATTCACTCTTGTAGGCAGTCAGTGGCTGGAGAGTGACAACATTGTACGTTCATTCGAGCCAAGTAAATTCCAGGCTCATTAGGagctgatttattttcattttaagctGTTATAAGAGACCTAGTTTACAAAACTAATTTATTACCCAGTTTATGACAAGACCAAAGACAAtgaacaaaatcatttttttaatttaagctaATTTATTAGAAGATTacttgaatgaaaaaaagaaacatttttgatTGTTTAGCTAAGatgatttatatttgtgttgtgCCAAAGAATGGTTTTGTTGCGGTATGAAAAcagtattataaataatttggtAAACCA

Function

NR:

description
pre-mRNA 3'-end-processing factor FIP1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946854.2 True 2119 mRNA 0.49 17 3554737 3585005
XM_026946855.2 False 2116 mRNA 0.49 17 3554737 3585005
XM_026946856.2 False 2026 mRNA 0.49 16 3554737 3585005

Neighbor

gene id symbol gene type direction distance location
rasl11b rasl11b coding upstream 152062 3399115 ~ 3402675 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 240274 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 276769 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 292687 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 410003 3142883 ~ 3144734 (+)
gsx2 gsx2 coding downstream 133101 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 146637 3731642 ~ 3753431 (+)
kita kit coding downstream 196385 3781390 ~ 3808749 (+)
LOC117599795 LOC107568747 coding downstream 293817 3878822 ~ 3885661 (+)
mgst3a mgst3 coding downstream 312010 3897015 ~ 3901866 (+)
G289240 NA non-coding upstream 60403 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 170855 3383677 ~ 3383882 (+)
G289145 NA non-coding upstream 184883 3364238 ~ 3369854 (+)
LOC113546783 NA non-coding upstream 186066 3364228 ~ 3368671 (+)
G289351 NA non-coding downstream 38059 3623064 ~ 3687916 (+)
G289363 NA non-coding downstream 125696 3710701 ~ 3739214 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 258110 3843115 ~ 3844679 (+)
G289515 NA non-coding downstream 357269 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 363191 3948196 ~ 3948458 (+)
cnstb LOC108257742 other upstream 1058685 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1412556 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1533474 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2194621 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2290105 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 358489 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 403047 3988052 ~ 3988123 (+)
G289531 NA other downstream 469452 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 663325 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 743827 4328832 ~ 4338299 (+)

Expression


Co-expression Network