Item | Value |
---|---|
gene id | fzd3a |
gene name | fzd3 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047613.1 |
NCBI id | CM018559.1 |
chromosome length | 22090854 |
location | 2336070 ~ 2354598 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
fzd3 | Enables PDZ domain binding activity and Wnt-protein binding activity. Involved in canonical Wnt signaling pathway. Located in cytoplasm and plasma membrane. Implicated in Williams-Beuren syndrome and schizophrenia. |
description |
---|
frizzled-3 |
id | name | namespace |
---|---|---|
GO:0060070 | canonical Wnt signaling pathway | biological_process |
GO:0008406 | gonad development | biological_process |
GO:0007199 | G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger | biological_process |
GO:0001736 | establishment of planar polarity | biological_process |
GO:0042472 | inner ear morphogenesis | biological_process |
GO:0001843 | neural tube closure | biological_process |
GO:0071679 | commissural neuron axon guidance | biological_process |
GO:0033278 | cell proliferation in midbrain | biological_process |
GO:0001944 | vasculature development | biological_process |
GO:0021754 | facial nucleus development | biological_process |
GO:0032589 | neuron projection membrane | cellular_component |
GO:0030424 | axon | cellular_component |
GO:0030425 | dendrite | cellular_component |
GO:0048786 | presynaptic active zone | cellular_component |
GO:0043025 | neuronal cell body | cellular_component |
GO:0045177 | apical part of cell | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0030165 | PDZ domain binding | molecular_function |
GO:0042813 | Wnt-activated receptor activity | molecular_function |
GO:0017147 | Wnt-protein binding | molecular_function |
GO:0004930 | G protein-coupled receptor activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026946862.2 | True | 5009 | mRNA | 0.47 | 7 | 2336071 | 2354598 |
XM_026946863.2 | False | 5007 | mRNA | 0.47 | 7 | 2336070 | 2354598 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
tdrd6 | NA | coding | upstream | 123869 | 2189759 ~ 2212201 (+) |
pla2g7 | pla2g7,LOC108440964,LOC102291497,LOC107553425 | coding | upstream | 154914 | 2162431 ~ 2181156 (+) |
adgrf3b | adgrf1 | coding | upstream | 177376 | 2151234 ~ 2158694 (+) |
LOC117599673 | NA | coding | upstream | 204799 | 2122561 ~ 2131271 (+) |
tnfrsf21 | tnfrsf21 | coding | upstream | 216153 | 2092475 ~ 2119917 (+) |
lft1 | lft1,LOC108257744,LOC107732386,LOC107698358 | coding | downstream | 82100 | 2436698 ~ 2439040 (+) |
kif26bb | kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 | coding | downstream | 100195 | 2454793 ~ 2474603 (+) |
stmn4 | stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 | coding | downstream | 257603 | 2612201 ~ 2618880 (+) |
paqr8 | LOC100304624 | coding | downstream | 285682 | 2640280 ~ 2644268 (+) |
LOC113546789 | NA | coding | downstream | 291475 | 2646073 ~ 2654271 (+) |
G288512 | NA | non-coding | upstream | 9781 | 2325658 ~ 2326289 (+) |
G288461 | SF3B6,sf3b6,pm14 | non-coding | upstream | 117432 | 2215577 ~ 2218638 (+) |
LOC117599781 | NA | non-coding | upstream | 184832 | 2147215 ~ 2151238 (+) |
G288225 | NA | non-coding | upstream | 262189 | 2026869 ~ 2073881 (+) |
G288242 | NA | non-coding | upstream | 264794 | 2071034 ~ 2071276 (+) |
G288581 | hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 | non-coding | downstream | 93824 | 2448422 ~ 2453374 (+) |
G288694 | NA | non-coding | downstream | 151971 | 2506569 ~ 2515375 (+) |
G288734 | NA | non-coding | downstream | 226711 | 2581309 ~ 2608373 (+) |
G288740 | NA | non-coding | downstream | 273160 | 2627758 ~ 2628318 (+) |
G288789 | NA | non-coding | downstream | 409672 | 2764270 ~ 2765055 (+) |
LOC113546780 | NA | other | upstream | 193889 | 2133158 ~ 2142181 (+) |
ptchd4 | ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 | other | upstream | 314807 | 1996120 ~ 2021263 (+) |
srp9 | srp9,LOC107553440,LOC107601484 | other | upstream | 975954 | 1358186 ~ 1360116 (+) |
LOC117599677 | NA | other | upstream | 1071438 | 1259176 ~ 1264632 (+) |
G287892 | NA | other | upstream | 1092398 | 1243057 ~ 1243672 (+) |
cnstb | LOC108257742 | other | downstream | 130438 | 2485036 ~ 2496052 (+) |
ipo13 | ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 | other | downstream | 1588896 | 3943494 ~ 3982694 (+) |
trnad-guc_14 | NA | other | downstream | 1633454 | 3988052 ~ 3988123 (+) |
G289531 | NA | other | downstream | 1699859 | 4054457 ~ 4070367 (+) |
clocka | clock,LOC107701480 | other | downstream | 1893732 | 4248330 ~ 4309929 (+) |