slc10a4 (slc10a4)


Basic Information

Item Value
gene id slc10a4
gene name slc10a4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3135733 ~ 3141717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946889.2
agagagagagagagagagagagaaagttgtCCTGCATGTCATGACAGAGATCGGGTTTGTTCTGTCCAGGACAGAGATGCACTTTTTTCTAGTTCTCATCCCCGGATAATtattcagatcagatcagatctaAGTCTCGTTGCTCACGCACGTGCCCTCAGAGGTGCCATTGCAGCCTTAACGGAGGCGCGCGCGCACTCCCCGCACTCTCCCGCGTCACGTCACAATGAGCGCGCGCTGCTGAAGGCGCAGTCGCTCAGAGGCTCTCCGGGTTCCTGTAAGCTTCCTCCCGGGATCACAGTGAGCACGATGGAGAACTCCAGCAGTGATCCCTCCACCGCGGCGCTTCTAAACCTCGCGGGGAATGCCGTGAACGCGTCCAAGATCCCGGACGCCGCCTTGGAGAGCTGGAGCGCGTCGGAGGAGCCGCTGGTACCCGCGCGCTTGGCCGTGGCGTTCTGGGACTCGCCGCTGAGCCACGGCATGAACGTGTTCGTGGGCTTCATCCTGTGCTTCACCATGCTCGGGCTCGGCTGCACGGTGGAGATCAGTCAGTTGGGCGAGCACGTGCGCAGGCCGGTCGGGGTGCTGCTCGCGGCCATCTGCCAGTTCGCCATCATGCCGCTGGTGGCCTTCCTGCTGGCGCTCGCCTTCTCTCTGGACGACGTGGCCGCAGTGGCGGTGCTGCTGTGCGGCTGCTGCCCGGGGGGCAACCTGTCTAACCTCATGACCCTGCTGATCAACGGAGAGATGAACCTCAGtgTTATAATGACCATCTCGTCCACGGTGCTGGCGCTGCTGCTCATGCCGCTGTGTTTGTGGCTGTACAGTCGCGCGTGGATCGACACGCCGGTGGTGCAGCTGCTGCCGCTGGGCGCCATCACTCTCACCGTCTGCAGCACACTCATCCCCATCGGACTCGGGGTCGCACTCAGGTCCCTGTACCCCCGCGCCGCTGACATCGTGCTCAAGGTGTCTCTGTGGTTGATGCTCATCACACTGGTGCTGCTGTTCATCATGACAGGTGTCATGCTGGGGCCTGAGCTGCTAGCAACCATCCCTCCCGCGGTGTACGTAGTAGCCGTGCTCATGCCGATGGCGGGATACGCAGCAGGCTATGGGCTGGCCATGTTCTTCTCTCTACCACCCAATGGCTCCCGCACCGTATCACTAGAGACGGGCTGCCAGAACGTCCAGCTCTGCACGGCCATCCTGAAGCTGGCTTTCCCTCCACAGCTCATGGGGGCAATGTACATGTTCCCGCTGCTCTACGCACTCTTCCAGGCAGCCGAGGCCGCCGTCATCATCCTGGTGTATCGCGCATACAGGAGCGAGGTGCTTCGCAAGCAGGACCTGACTGGAGAGGACGATGATGACACCAACATCACATACAAGAGAatgaaggaggaggaagacGGGCCGTTTGACACAGCGTACGGTTCAGTTACCGTAAACAACCCCAACTCCATTGAGCTGGAGACTCAGGGAGGGGCAGGAAGCCCAACGCCTCTGTAgaagacacaaaaaaaatgggACATCACTGTGAACAGATGCTTGAACTGTGCAATACATTGTGACATTCCATGTTTTTAATGCCAATCACTCACTGCTGAAGTATTATAGCTGTATTTTCAATTCGATTTCTCATTACCCCATCATTGGTAATATAGCCTTTAAGATCTCTGAAGCCTTTCTTTCAAAAAGAAACTCACTGCACTTTTAAGAAACTCCTCTATTCAGAACAAGCTGCCATGAGAACTAGAGAAATAGATATACAGCTTAAACCTTAATCTTGGGCTAATTACGCATATATCGACCATGATCATTCTTCGCTGACAGTCTGTGCTTAGGCTTAGTTTGAGTGCCCCAAATAACCCTTTCCTGGAAATTCGTATATTCATGTTCCTAAATGCTCATGATGCCATCTTAATGgtacttataaatattataaaatttacATAATTCAGCTATAGGACTATTCAAATAAATGCCTTATTCCGAatctcagaaataaagttatAGGTGAGGAAGAACCTCCATATGCACTTCTGTtattcagtgtcagtgtatGTGCAGTGGGATTGGTAATAAGGTGTATAAAGGAGTTTATGAAGACTGTGCAGGACAACCACTACTTCTTTTGTTAAAATACAGAACTGACCTGACTTTATATGTTTACAGCAAATGAGATGAGGGAGTCAGGAAAGTATACTGTTAATAAAAGCATGATATTGCCCAGCTGTa

Function

symbol description
slc10a4 Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human SLC10A4 (solute carrier family 10 member 4).

NR:

description
PREDICTED: sodium/bile acid cotransporter 4

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG:

id description
K14344 SLC10A4; solute carrier family 10 (sodium/bile acid cotransporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946889.2 True 2244 mRNA 0.53 3 3135733 3141717

Neighbor

gene id symbol gene type direction distance location
slain2 slain2 coding upstream 7613 3101394 ~ 3128120 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding upstream 34972 3084649 ~ 3100761 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding upstream 159488 2967201 ~ 2976245 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding upstream 179867 2951771 ~ 2955866 (+)
niban1a LOC108258050 coding upstream 186156 2931354 ~ 2949577 (+)
zar1 zar1 coding downstream 1166 3142883 ~ 3144734 (+)
ociad2 NA coding downstream 116456 3258173 ~ 3262050 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 122230 3263947 ~ 3277968 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding downstream 163336 3305053 ~ 3314463 (+)
rasl11b rasl11b coding downstream 257398 3399115 ~ 3402675 (+)
G288839 NA non-coding upstream 155528 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 218923 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 265067 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 370678 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 507415 2627758 ~ 2628318 (+)
G288927 NA non-coding downstream 50390 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 137689 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 199684 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 222511 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 222521 3364238 ~ 3369854 (+)
cnstb LOC108257742 other upstream 639681 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 993552 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1114470 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1775617 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1871101 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 801777 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 846335 3988052 ~ 3988123 (+)
G289531 NA other downstream 912740 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1106613 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1187115 4328832 ~ 4338299 (+)

Expression


Co-expression Network