zar1 (zar1)


Basic Information

Item Value
gene id zar1
gene name zar1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3142883 ~ 3144734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946890.2
ATTCGCTCCATCAGGCGGCTAAgcggaaaaaataaaatggctacGTACGGAGACGAGTCACTCGACAACTACGTTTACTCCTCGTATAACCCTTACTCGTACAGATGCCCGAAGCCCAGGAGCTGGCGGCAGAAGAGCTACCTGAGCGCGTACAGCGACGGCGAGGGCTATTTCGACAACTACCACCGCGCGCAGCTCAAATCCATCCTGTCGCAGATCAACCCGAACCTCACACCGCGCCTGCGCAAAGCCAACACCAAAGACGTGGGAGTGCAGGTGAACCCGAAGGCCGACGCCTCGGTGCAATGCTCGCTTGGACCGCGCACTTTGGCTGCGCGCCGGCGGGACGCAGTGCGCAGGCGCAGACCGGATGGCCAGACACCCGGGAGCCCGGTGAGCACCGGGGTTCGGTTCCCGCGCACACACGCCGTGTACTCCCCGATCGCCACGCGGGGACTCGCGGCTCTCCTGCAGgaccatgatgatgatgatgatgatgatgatgatgagcagcAGAAGTGTGGAGGAAGGACAGAAGAGGTCGAGAGCACAGATAAGGGCGAGGAGCTGGAAGAGGGCGTGGAGGACAAAGAACCAAAACCCAAAAAATCCAAACCAAAGCTTAGTCCCAGGAAAAACAATGATGAAGGCGAGCAGATAAAAGTGGACGATGGAATCAAGAGTGAGAATGAGAAAAGCGGTCAGGACGACTCCAAGTCCAAGGGGAGAGTGCGCTTCCAGTTTTTGGAGCAGAAGTACGGCTACTACCACTGCAGAGAGTGCAACCTTCGCTGGGAGAGCGCCTACGTGTGGTGTGTTCAGGGCACAAACAAGGTTTATTTCAAGCAGTTTTGCAGAACGTGCCAGAAGGCTTTCAACCCATACCGGGTAGAGGACATAACCTGTCAGGGCTGCAAGAAGGCGCGTTGTACATGTCCAGGGACGGCACGCCACGTGGATCCTAAACGGCCACACCGACAAGACCTGTGTGGTCGCTGCAAAGGCAAACGGCTCTCCTGCGACAGCACGTTCAGTTTTAAGTACATCATATAGTGCGTCCTCTGATCCCTGCACAGAATCTATCCCGATGGCGGTTCACTGCTGTTCTAACTAATGCATGGGCAAGGATCTCTGCCATCCTTGGCCTCCACCAGGGACGACCTCCGAGACTGAAGCAGAAGTCTTGAAGAGGGAGGCCTTGTACCAGCGCCAAAGACTgtgatggtttttgttttcattcactTGTGTTAAACAGCAGCGGTCTCAGTAGTGAACCATTTCggaaaattgaaaataaatcgAAATTAACAGCA

Function

symbol description
zar1 Enables mRNA binding activity involved in posttranscriptional gene silencing. Acts upstream of with a negative effect on translation. Acts upstream of or within negative regulation of translation and positive regulation of oogenesis. Part of protein-containing complex. Is expressed in gonad; liver; oocyte stage I; and oocyte stage II. Orthologous to human ZAR1 (zygote arrest 1).

NR:

description
PREDICTED: zygote arrest protein 1-like isoform X2

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946890.2 True 1313 mRNA 0.55 4 3142883 3144734

Neighbor

gene id symbol gene type direction distance location
slc10a4 slc10a4 coding upstream 1166 3135733 ~ 3141717 (+)
slain2 slain2 coding upstream 14763 3101394 ~ 3128120 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding upstream 42122 3084649 ~ 3100761 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding upstream 166638 2967201 ~ 2976245 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding upstream 187017 2951771 ~ 2955866 (+)
ociad2 NA coding downstream 113439 3258173 ~ 3262050 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 119213 3263947 ~ 3277968 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding downstream 160319 3305053 ~ 3314463 (+)
rasl11b rasl11b coding downstream 254381 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 410003 3554737 ~ 3585005 (+)
G288839 NA non-coding upstream 162678 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 226073 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 272217 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 377828 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 514565 2627758 ~ 2628318 (+)
G288927 NA non-coding downstream 47373 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 134672 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 196667 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 219494 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 219504 3364238 ~ 3369854 (+)
cnstb LOC108257742 other upstream 646831 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1000702 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1121620 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1782767 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1878251 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 798760 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 843318 3988052 ~ 3988123 (+)
G289531 NA other downstream 909723 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1103596 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1184098 4328832 ~ 4338299 (+)

Expression


Co-expression Network