rxrgb (LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718)


Basic Information

Item Value
gene id rxrgb
gene name LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1472182 ~ 1519008 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946895.2
CACTGTAGCTTCCCTTCACTCATTCCGGGCAGCGGAATGGACTGAGATGCCGCTGTGTGAACCTGAGCAACTCTACAGCCAcccgaagaagaagaagaagaagaagaagaagaagaagtcaaCGGAAGTACAGAGATAAGCAGAGATGGACAACAGTGACGCGTATTTACATCTCAACTCACCTGGGGCGCTTAACTCCTCCCTCTCGCAGCCTCCATCAATGAGCTCCATGATCAATCATGCGTCCGTCATCAGTACCTCAGGTCCGCTCCCTTCGGCTATGGGCTACTCGGTCATCACTTCCTCTATGAGCTCGCCCTCTGTCTCACTACCCTCCACGCCTGCCATGGGCTTTGGCGCCCTCAATAGCCCACAGATGAACTCTCTGAGCAGTGTCAGCAGCTCAGAGGATGTGAAGCCTCCTCCTGGTCTGCCACCTCTGGCCAACGTCAACAGCTACCAGTGCACCAGTCCTGGCTCCATGTCCAAACACATCTGCTCCATCTGTGGTGATCGCTCCTCAGGAAAACACTATGGTGTGTACAGCTGTGAGGGGTGCAAAGGTTTCTTCAAGAGGACCATCCGGAAAGACCTGACCTACACTTGTCGAGACAACAAGGAGTGTCTGATTGACAAACGCCAGCGCAATCGCTGCCAATACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGagggaagCGGTTCAGGAAGAGAGGCAGCGTGGGAAGGAGAAAAGCGATAACGAGGTGGAGTCAACCAGCAGTTTTAATGAGGACATGCCTGTGGAGAAGATCCTGGACGCTGAGCTCGCAGTGGAACCcaagactgaaacacacacagatgacagTCCAGCAAACTCTacaaaTGACCCAGTCACTAACATCTGCCAGGCAGCAGACAAGCAGCTCTTCACACTGGTCGAATGGGCTAAAAGGATACCTCACTTCTCAGACCTTCCCCTGGATGATCAGGTCATTTTGCTTCGGGCAGGCTGGAATGAGCTGCTCATCGCCTCCTTCTCACACCGTTCGGTCACAGTAAAAGATGGTATCTTGCTGGCCACAGGTCTCCATGTGCATCGGAGCAGTGCACACAGTGCTGGAGTGGGCTCTATTTTTGACCGagTGTTGACTGAGCTGGTGTCTAAGATGAAGGACATGCAGATGGATAAGACAGAGCTAGGATGCCTCAGAGCCATCGTTCTTTTTAACCCTGATGCTAAAGGCCTGTCTAACCCAGCCGAGGTGGAGATGCTTAGAGAAAAAGTATATGCCTCGTTGGAGTCTTACACCAAGCAAAAATACCCCAACCAGCCCGGCAGgtTTGCCAAGCTTTTACTGCGTCTCCCTGCTCTGCGGTCTATTGGACTGAAGTGTTTAGAGCATCTCTTCTTCTTCAAGCTGATTGGAGACACACCCATAGACACCTTCCTCATGGAGATGCTCGAAGCACCTCATCAGATAACATGACATAAGCCCTGCCccccttttccttttctttttgtaaatgCATCCATGTAATAACTGGTAATTAATGAACTCGACTGAGGATGTAAGCTACATGTTTTGTACCAAGCACAGACCATACCTGCTGTGAGATGTGTATGGAGGAAACAGAACAGGGTGGGAAGAAGCTCATGAAATACACTgtcaaaatgaattttaatcGATGTTTTTTCTGAAAAGAGCTTTGTCTTGTAAATAGATCATTTTCAGGCATCCAGTCTAACAGCAAaacaatgggg
>XM_026946896.2
GCATGGTTCAGTGTACTGTGCCCGGACACGGTACGGAGCGATCACACTAGTCAAACGAACTGCACTTTGAGGGTCAACTGTGCTCGGGCACGGTACAGATCGCCTAGAACTCACCTGGGGCGCTTAACTCCTCCCTCTCGCAGCCTCCATCAATGAGCTCCATGATCAATCATGCGTCCGTCATCAGTACCTCAGGTCCGCTCCCTTCGGCTATGGGCTACTCGGTCATCACTTCCTCTATGAGCTCGCCCTCTGTCTCACTACCCTCCACGCCTGCCATGGGCTTTGGCGCCCTCAATAGCCCACAGATGAACTCTCTGAGCAGTGTCAGCAGCTCAGAGGATGTGAAGCCTCCTCCTGGTCTGCCACCTCTGGCCAACGTCAACAGCTACCAGTGCACCAGTCCTGGCTCCATGTCCAAACACATCTGCTCCATCTGTGGTGATCGCTCCTCAGGAAAACACTATGGTGTGTACAGCTGTGAGGGGTGCAAAGGTTTCTTCAAGAGGACCATCCGGAAAGACCTGACCTACACTTGTCGAGACAACAAGGAGTGTCTGATTGACAAACGCCAGCGCAATCGCTGCCAATACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGagggaagCGGTTCAGGAAGAGAGGCAGCGTGGGAAGGAGAAAAGCGATAACGAGGTGGAGTCAACCAGCAGTTTTAATGAGGACATGCCTGTGGAGAAGATCCTGGACGCTGAGCTCGCAGTGGAACCcaagactgaaacacacacagatgacagTCCAGCAAACTCTacaaaTGACCCAGTCACTAACATCTGCCAGGCAGCAGACAAGCAGCTCTTCACACTGGTCGAATGGGCTAAAAGGATACCTCACTTCTCAGACCTTCCCCTGGATGATCAGGTCATTTTGCTTCGGGCAGGCTGGAATGAGCTGCTCATCGCCTCCTTCTCACACCGTTCGGTCACAGTAAAAGATGGTATCTTGCTGGCCACAGGTCTCCATGTGCATCGGAGCAGTGCACACAGTGCTGGAGTGGGCTCTATTTTTGACCGagTGTTGACTGAGCTGGTGTCTAAGATGAAGGACATGCAGATGGATAAGACAGAGCTAGGATGCCTCAGAGCCATCGTTCTTTTTAACCCTGATGCTAAAGGCCTGTCTAACCCAGCCGAGGTGGAGATGCTTAGAGAAAAAGTATATGCCTCGTTGGAGTCTTACACCAAGCAAAAATACCCCAACCAGCCCGGCAGgtTTGCCAAGCTTTTACTGCGTCTCCCTGCTCTGCGGTCTATTGGACTGAAGTGTTTAGAGCATCTCTTCTTCTTCAAGCTGATTGGAGACACACCCATAGACACCTTCCTCATGGAGATGCTCGAAGCACCTCATCAGATAACATGACATAAGCCCTGCCccccttttccttttctttttgtaaatgCATCCATGTAATAACTGGTAATTAATGAACTCGACTGAGGATGTAAGCTACATGTTTTGTACCAAGCACAGACCATACCTGCTGTGAGATGTGTATGGAGGAAACAGAACAGGGTGGGAAGAAGCTCATGAAATACACTgtcaaaatgaattttaatcGATGTTTTTTCTGAAAAGAGCTTTGTCTTGTAAATAGATCATTTTCAGGCATCCAGTCTAACAGCAAaacaatgggg
>XM_026946897.2
TTACATCTCAACTCACCTGGGGCGCTTAACTCCTCCCTCTCGCAGCCTCCATCAATGAGCTCCATGATCAATCATGCGTCCGTCATCAGTACCTCAGGTCCGCTCCCTTCGGCTATGGGCTACTCGGTCATCACTTCCTCTATGAGCTCGCCCTCTGTCTCACTACCCTCCACGCCTGCCATGGGCTTTGGCGCCCTCAATAGCCCACAGATGAACTCTCTGAGCAGTGTCAGCAGCTCAGAGGATGTGAAGCCTCCTCCTGGTCTGCCACCTCTGGCCAACGTCAACAGCTACCAGTGCACCAGTCCTGGCTCCATGTCCAAACACATCTGCTCCATCTGTGGTGATCGCTCCTCAGGAAAACACTATGGTGTGTACAGCTGTGAGGGGTGCAAAGGTTTCTTCAAGAGGACCATCCGGAAAGACCTGACCTACACTTGTCGAGACAACAAGGAGTGTCTGATTGACAAACGCCAGCGCAATCGCTGCCAATACTGCCGCTACCAGAAGTGTCTGGCCATGGGCATGAAGagggaagCGGTTCAGGAAGAGAGGCAGCGTGGGAAGGAGAAAAGCGATAACGAGGTGGAGTCAACCAGCAGTTTTAATGAGGACATGCCTGTGGAGAAGATCCTGGACGCTGAGCTCGCAGTGGAACCcaagactgaaacacacacagatgacagTCCAGCAAACTCTacaaaTGACCCAGTCACTAACATCTGCCAGGCAGCAGACAAGCAGCTCTTCACACTGGTCGAATGGGCTAAAAGGATACCTCACTTCTCAGACCTTCCCCTGGATGATCAGGTCATTTTGCTTCGGGCAGGCTGGAATGAGCTGCTCATCGCCTCCTTCTCACACCGTTCGGTCACAGTAAAAGATGGTATCTTGCTGGCCACAGGTCTCCATGTGCATCGGAGCAGTGCACACAGTGCTGGAGTGGGCTCTATTTTTGACCGagTGTTGACTGAGCTGGTGTCTAAGATGAAGGACATGCAGATGGATAAGACAGAGCTAGGATGCCTCAGAGCCATCGTTCTTTTTAACCCTGATGCTAAAGGCCTGTCTAACCCAGCCGAGGTGGAGATGCTTAGAGAAAAAGTATATGCCTCGTTGGAGTCTTACACCAAGCAAAAATACCCCAACCAGCCCGGCAGgtTTGCCAAGCTTTTACTGCGTCTCCCTGCTCTGCGGTCTATTGGACTGAAGTGTTTAGAGCATCTCTTCTTCTTCAAGCTGATTGGAGACACACCCATAGACACCTTCCTCATGGAGATGCTCGAAGCACCTCATCAGATAACATGACATAAGCCCTGCCccccttttccttttctttttgtaaatgCATCCATGTAATAACTGGTAATTAATGAACTCGACTGAGGATGTAAGCTACATGTTTTGTACCAAGCACAGACCATACCTGCTGTGAGATGTGTATGGAGGAAACAGAACAGGGTGGGAAGAAGCTCATGAAATACACTgtcaaaatgaattttaatcGATGTTTTTTCTGAAAAGAGCTTTGTCTTGTAAATAGATCATTTTCAGGCATCCAGTCTAACAGCAAaacaatgggg

Function

NR:

description
PREDICTED: retinoic acid receptor RXR-gamma-B-like

GO: NA

KEGG:

id description
K08526 RXRG, NR2B3; retinoid X receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946895.2 True 1749 mRNA 0.50 10 1472182 1519008
XM_026946896.2 False 1681 mRNA 0.50 10 1499811 1519008
XM_026946897.2 False 1583 mRNA 0.50 11 1483619 1519008

Neighbor

gene id symbol gene type direction distance location
olfml2ba LOC108257824 coding upstream 92981 1364084 ~ 1379201 (+)
LOC117599793 LOC108257824 coding upstream 127551 1340508 ~ 1344631 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 139355 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 264143 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 436086 1014884 ~ 1036096 (+)
lmx1a LOC108257702 coding downstream 2931 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 73556 1592564 ~ 1595352 (+)
c19h1orf112 c25h1orf112 coding downstream 82442 1601450 ~ 1623462 (+)
prg4b LOC108257844 coding downstream 119256 1638264 ~ 1648550 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding downstream 211518 1730526 ~ 1758301 (+)
G288039 NA non-coding upstream 15808 1455908 ~ 1456374 (+)
G288038 NA non-coding upstream 16348 1454970 ~ 1455834 (+)
G288036 NA non-coding upstream 18312 1453575 ~ 1453870 (+)
G287962 NA non-coding upstream 37044 1434555 ~ 1435138 (+)
G287891 NA non-coding upstream 230115 1241861 ~ 1242067 (+)
LOC117599747 NA non-coding downstream 47188 1566196 ~ 1567317 (+)
G288134 NA non-coding downstream 79383 1598391 ~ 1598593 (+)
G288171 LOC108257608 non-coding downstream 176900 1695908 ~ 1698167 (+)
G288192 NA non-coding downstream 415569 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 476452 1995460 ~ 1995679 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 112066 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 207550 1259176 ~ 1264632 (+)
G287892 NA other upstream 228510 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 573772 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 477112 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 614150 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 966028 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2424486 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2469044 3988052 ~ 3988123 (+)

Expression


Co-expression Network