LOC113546822


Basic Information

Item Value
gene id LOC113546822
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1476152 ~ 1478084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946898.2
tcctcataGTTTTACAGTCTAAATCAAACCATTGTTTGTTCTCATTTGGCCTTATGAATTTTCTTTAGGGCTGGGTAAtaaattgatattgatatttataaaaaaaataactccaTGATATCGATAATAAACTTTTTGAGCAATGTTCAATATTTAGCCTGTGTTTACAGTAAATAgtacacacttgcacacacgtTTCTGCATAAGCCACAGCGCAGTTGTGTCCGCAGTGGACGCGAGTCTTTTGTGGATGTAATGATGCTACAGCAATTACGTCATGTACAGTTACGGAGCTGAAAGGCAACATACGTTCCAAAAccaggaagaagaagaattttcGGAAACGTAGAAATGTGTGACCGTGAGGAGAGTCGGAGAGTCAAATGTCTGCTGGAGACAATGAATTTGTAGCGAAAAGAGGTCACATAAATTCGGTGATATGGAAGTGGTTTGGATTTCAAAAGTTGGATATAGAGCAGAACAATGTTTATTGTGGAATGTGCAGGCGACATGTGCAAACAGAGACAGGAAACAGAACATACCTTTTCTACCACTAGAAGGTACCAAAGTCTGCGGTCCAAAACTGCTAGCACTAGCATTCAAACTCGTAAACAACCCTTTTCTTGTAGTCTGACAGTGAGTCCCCTGCAGTAGTCGCTCGTATCTGCCTTTTCAGTGATTGCTCCATATGAGATGAGTTCAAAAAGAAGCAAGGACGTGACGAGCACAGTTTCATATTTTATAGAGAAAGACATGCTTCCAGTTAGAGGCTAATGAAAGTACTTGATCCCAGGTATGTCCCTGGacgaaaacatttttttaaaaacagtgctGCCAGTGTATGTGGCATGCAGAGGGAAACTGGAGgggaaacacatttttccatgACCACTGACATGTGGTCTAGCCACAATTCAGAGCCTTACATGAGCCTCACTATCCAATACATTGATGAGGAGTGGAATCTTGTAAACACATGCATGCaaacagattattttcctgagGACCACACTGGTGAGACAATAGCACGAGGGCATACAGAGTCACTTGCATCAAGGGACCTCAGCGAGGACAGGCTGGTGTGTGCTATCACAGACAACAGGGCTAATGTAGTCCAAGCCATCTCCCTCAATAACTGGACCCGACTGCAGTGTTTTGGTCACCAGCTCCACCTAGCCCTTGGGAGAAGTGGGAGAGACAAGAGACTGGAAAGAGCAATTGGGTTGTGCAAAAGAGTGGTCAGTGCTTTCTCTGTTTcctggaagaagaagaagaagagagacttGTCAGTGGCACAAGAGGAATGTTCTTTACCTCAGCACAATTTGGTCACAGAATCACCTACCAAGTGGGGTTCGCGGCTGAAGATGTTAGAATGGGTGCTTGAACAGGAGAGGGCCATTACACAGGTCctttaattcttatttttatatcttattttGTGTCTTCTTGTACCTCTACTAGTGTTTAACAGATGCTGAAAAGTCTTTTCTTTATTAGGAACCAGACCAGTACTTGTCACTTAAgtcacatttttctcatttgtatAGATATGCAGAgtgatttcatttttgttgtatacagtgtatttatgtagcacttaaaaataaatacaacagcCATAATGTGTATGTTGAGcttttgtgttatgtttttctaAAAGCATTTTTGCCATTGCCTTGAGGTGTAAATGCCATGTTGGTTGTGGAAAGTACCAACTTgttgtttaagaaataaataactgttCAGAACCAGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946898.2 True 1756 mRNA 0.41 2 1476152 1478084

Neighbor

gene id symbol gene type direction distance location
olfml2ba LOC108257824 coding upstream 96951 1364084 ~ 1379201 (+)
LOC117599793 LOC108257824 coding upstream 131521 1340508 ~ 1344631 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 143325 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 268113 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 440056 1014884 ~ 1036096 (+)
lmx1a LOC108257702 coding downstream 43855 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 114480 1592564 ~ 1595352 (+)
c19h1orf112 c25h1orf112 coding downstream 123366 1601450 ~ 1623462 (+)
prg4b LOC108257844 coding downstream 160180 1638264 ~ 1648550 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding downstream 252442 1730526 ~ 1758301 (+)
G288048 NA non-coding upstream 703 1473930 ~ 1475449 (+)
G288047 NA non-coding upstream 3055 1472713 ~ 1473097 (+)
G288039 NA non-coding upstream 19778 1455908 ~ 1456374 (+)
G288038 NA non-coding upstream 20318 1454970 ~ 1455834 (+)
G288036 NA non-coding upstream 22282 1453575 ~ 1453870 (+)
LOC117599747 NA non-coding downstream 88112 1566196 ~ 1567317 (+)
G288134 NA non-coding downstream 120307 1598391 ~ 1598593 (+)
G288171 LOC108257608 non-coding downstream 217824 1695908 ~ 1698167 (+)
G288192 NA non-coding downstream 456493 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 517376 1995460 ~ 1995679 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 116036 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 211520 1259176 ~ 1264632 (+)
G287892 NA other upstream 232480 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 577742 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 518036 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 655074 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1006952 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2465410 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2509968 3988052 ~ 3988123 (+)

Expression


Co-expression Network