LOC113546823 (LOC108257899)


Basic Information

Item Value
gene id LOC113546823
gene name LOC108257899
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3905694 ~ 3917080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946899.2
TAATGAGCTTTCATTTCAGATGACGGTTTTTCGGTGTTGTTTTCAGGCTACCAGAATGAACTGGGATAATCAGTTGAGTCACATTATCTCAGCAGCTGATGGCAGTGTTGCAAAAATACGTGAACGCCTTGCTTTTCCTGGAAGGCTttccagagaaagagaagATGTGTATCCAGTGAGAGATCTGAGTCATGCTACGGGTTTGGACCCTCCTGTACGTCTTAGCGGTGCTGTTCAGTGGACAGATCTGGCAGCTGTACAGGACCAGCTTCATAACCAGCGCCAGACAATTGAGGCCTTAACGCAGAACCTGCGGTcagtggagagagaaagagatgctCAACAAAGACAAATACAGACGTTGCAAGAGGAGGTGAGGAGGCTTCGGGAGAGACTGGAGGAccgggagaaggagagagaacgGAAGCAGGACATGGACGGAGAGAAGGTCCCCGCAGTGGAGATGCGGCTGGAGCAATGGAAAAGGGAAGTGGGACGGGAGCTGAGCGCCCTTAGAGGGCACATCGACAGGGCCACGTCTCTAGGCAACAGGGAGGAAAGTTTCAGCTCTAAACTGTGCAGGGAGGAGGTGGAACAGCTCAGGAGAGAGGTAGACCTGCTCAAAAGCAAGCTGATGAGGCATGAGGAGGATATGTACCAACAGCAGTCTGAAGCAAGGGAAATGAGGAGGCAGTGCGAGCGCAGCTGCAAGACACTGGAAACCGTCACCGATTCTTACCGCACACATGGCTTTGAACTTTCCAGGATCGTCTCACAGTATCAGCACACACAGCAAGACGTGAGAGATCTCAGaCTTACAATATCTGGATTGAAGGATGAAGTGAGAGGCCTAATTTCGAGAGACAGACTCGACACACCTGCAGAAAGGCCGCGGAAGTCaaATCCTTTGGAGGCAGCGGTTGCTGTGGAGATGAGTCCTCGGAGACGGTTTTTGTCAGACTCAGATGATGAATTGAGCCCCACCCCCAGTCTCGGAGACATAAGCTCAGATGACCTGGACACATCGTGGCTTGGGGAATCAGCCCCAGAAGTAAGAAGTCAAGGACGGGGTGCACGCTTGAGCCTGTCAGGAACTGATCTCAGCGACACTGCGAGTGGACTTGGGAGCAACCATGAAGACATAGATGGAAAAGTGGGAGGAGCTTCAGATGGTTCTCCAGAGCTCAGTCTCTGTGACCTTTGACtctagaaacaggaagtaaacagtGATTGCTGGTGCCAGTATGACCAACCATGTGGTCAGGGGAATCATTTGACATGTGAAATAAAACTAACCACAGGAAATTGACATGACCTAATTGACTAAAATACCTTGTTCTTAAGAAATGCACAGATTCACAATTGAATATTGCATACGAGTGTGTAGCTATGTGATGAAAGCCAACAATATTTTGTGATTAATGGAGTCTCTTATAATTTTCTGGTTTGTATAAGTGGAAAAGGCCCCGTTTATGGCTGAGTTTCTAGCTTCTAGATTATGTATTTTGCCTACTGCAAACAGTAAAAGCCACTAGATGTGTTATAAGAGTGGAATGAGTGGTGAAACAtcacttttgtgtatgttacTCCAAGCTACAGTgttcattcagtacattctttttttattaatgttgttgttttacagAGTTCAACAGGTGAAAATAATCTGAGAACTAGCCAATTGCACACTGTAATACTCAGTCTGTACAGAACATAGTGGTACTTCTTCTCCATTCGTTTTGAGAGTTCggtttcattttcagtgttaatcaTGCTGAAGTTAAAGCCACTTACATGTCAGTTTTGCTTCAAGAATAGACTCTGGCATTTCAAGTGCTATTTCAGTGCAGCTTTGTTTATGTGAATTAAGCCATGGATCTATTTTAAACTCTTTCTCAGACTGAGATATTTATTCATGTGAGGTTAGAAGTTGTGCACAGTGTGCTGATGAGCCTAGCCAGAAGTCTTCTTTATCTCACCCTTCTAGCGGAAACTTTTCAAGATGGGCCAACCTCCGCCTGAGAAACACattcatttcagtcattttccTCTTTCCGTTATCTGTCCTTTTATGTTCCTCTTTTAGACACTGAACTAtagcagaaagacagagattttttttttaagccttaATAGACACATGCTTattaagtaaattattttatgaatttaattaaattaaatgaggaaagagagaaggtgTTTTCACCTTGTAGTAATTtggacatttttgtttgtttgacaaCATTGTTATAGGTCAGATAAATCCATCACCCATGCAACTGTCACCAAACAAATGTCTGTCAAACTTACACAGGTAAAACTGATGACAATAAAGCATTTAATATGTTGTAAAGAaatttaatagtaataaaaaaaaaaacatttggaacATCAAACACgaaaacaggattttttttttttatacaaaacagCACTTCTGGCACATGAAGCAGAAAAC
>XM_034313657.1
CGGCGCTTTTGGCGCGTCATTCTTTCTACGCCTCCTGACGCGATGACGTCATGACGTCACGAAGGCTCCACGGTTTAAAAATTAGCAGTGCTGTAAGGCTACCAGAATGAACTGGGATAATCAGTTGAGTCACATTATCTCAGCAGCTGATGGCAGTGTTGCAAAAATACGTGAACGCCTTGCTTTTCCTGGAAGGCTttccagagaaagagaagATGTGTATCCAGTGAGAGATCTGAGTCATGCTACGGGTTTGGACCCTCCTGTACGTCTTAGCGGTGCTGTTCAGTGGACAGATCTGGCAGCTGTACAGGACCAGCTTCATAACCAGCGCCAGACAATTGAGGCCTTAACGCAGAACCTGCGGTcagtggagagagaaagagatgctCAACAAAGACAAATACAGACGTTGCAAGAGGAGGTGAGGAGGCTTCGGGAGAGACTGGAGGAccgggagaaggagagagaacgGAAGCAGGACATGGACGGAGAGAAGGTCCCCGCAGTGGAGATGCGGCTGGAGCAATGGAAAAGGGAAGTGGGACGGGAGCTGAGCGCCCTTAGAGGGCACATCGACAGGGCCACGTCTCTAGGCAACAGGGAGGAAAGTTTCAGCTCTAAACTGTGCAGGGAGGAGGTGGAACAGCTCAGGAGAGAGGTAGACCTGCTCAAAAGCAAGCTGATGAGGCATGAGGAGGATATGTACCAACAGCAGTCTGAAGCAAGGGAAATGAGGAGGCAGTGCGAGCGCAGCTGCAAGACACTGGAAACCGTCACCGATTCTTACCGCACACATGGCTTTGAACTTTCCAGGATCGTCTCACAGTATCAGCACACACAGCAAGACGTGAGAGATCTCAGaCTTACAATATCTGGATTGAAGGATGAAGTGAGAGGCCTAATTTCGAGAGACAGACTCGACACACCTGCAGAAAGGCCGCGGAAGTCaaATCCTTTGGAGGCAGCGGTTGCTGTGGAGATGAGTCCTCGGAGACGGTTTTTGTCAGACTCAGATGATGAATTGAGCCCCACCCCCAGTCTCGGAGACATAAGCTCAGATGACCTGGACACATCGTGGCTTGGGGAATCAGCCCCAGAAGTAAGAAGTCAAGGACGGGGTGCACGCTTGAGCCTGTCAGGAACTGATCTCAGCGACACTGCGAGTGGACTTGGGAGCAACCATGAAGACATAGATGGAAAAGTGGGAGGAGCTTCAGATGGTTCTCCAGAGCTCAGTCTCTGTGACCTTTGACtctagaaacaggaagtaaacagtGATTGCTGGTGCCAGTATGACCAACCATGTGGTCAGGGGAATCATTTGACATGTGAAATAAAACTAACCACAGGAAATTGACATGACCTAATTGACTAAAATACCTTGTTCTTAAGAAATGCACAGATTCACAATTGAATATTGCATACGAGTGTGTAGCTATGTGATGAAAGCCAACAATATTTTGTGATTAATGGAGTCTCTTATAATTTTCTGGTTTGTATAAGTGGAAAAGGCCCCGTTTATGGCTGAGTTTCTAGCTTCTAGATTATGTATTTTGCCTACTGCAAACAGTAAAAGCCACTAGATGTGTTATAAGAGTGGAATGAGTGGTGAAACAtcacttttgtgtatgttacTCCAAGCTACAGTgttcattcagtacattctttttttattaatgttgttgttttacagAGTTCAACAGGTGAAAATAATCTGAGAACTAGCCAATTGCACACTGTAATACTCAGTCTGTACAGAACATAGTGGTACTTCTTCTCCATTCGTTTTGAGAGTTCggtttcattttcagtgttaatcaTGCTGAAGTTAAAGCCACTTACATGTCAGTTTTGCTTCAAGAATAGACTCTGGCATTTCAAGTGCTATTTCAGTGCAGCTTTGTTTATGTGAATTAAGCCATGGATCTATTTTAAACTCTTTCTCAGACTGAGATATTTATTCATGTGAGGTTAGAAGTTGTGCACAGTGTGCTGATGAGCCTAGCCAGAAGTCTTCTTTATCTCACCCTTCTAGCGGAAACTTTTCAAGATGGGCCAACCTCCGCCTGAGAAACACattcatttcagtcattttccTCTTTCCGTTATCTGTCCTTTTATGTTCCTCTTTTAGACACTGAACTAtagcagaaagacagagattttttttttaagccttaATAGACACATGCTTattaagtaaattattttatgaatttaattaaattaaatgaggaaagagagaaggtgTTTTCACCTTGTAGTAATTtggacatttttgtttgtttgacaaCATTGTTATAGGTCAGATAAATCCATCACCCATGCAACTGTCACCAAACAAATGTCTGTCAAACTTACACAGGTAAAACTGATGACAATAAAGCATTTAATATGTTGTAAAGAaatttaatagtaataaaaaaaaaaacatttggaacATCAAACACgaaaacaggattttttttttttatacaaaacagCACTTCTGGCACATGAAGCAGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946899.2 False 2461 mRNA 0.43 12 3905792 3917080
XM_034313657.1 True 2512 mRNA 0.44 12 3905694 3917080

Neighbor

gene id symbol gene type direction distance location
mgst3a mgst3 coding upstream 3828 3897015 ~ 3901866 (+)
LOC117599795 LOC107568747 coding upstream 20033 3878822 ~ 3885661 (+)
kita kit coding upstream 96945 3781390 ~ 3808749 (+)
pdgfra pdgfra coding upstream 152263 3731642 ~ 3753431 (+)
gsx2 gsx2 coding upstream 185206 3718106 ~ 3720488 (+)
pfas pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297 coding downstream 74587 3991667 ~ 4016550 (+)
hook1 hook1 coding downstream 107602 4024682 ~ 4045273 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding downstream 184589 4101669 ~ 4115455 (+)
aasdh aasdh coding downstream 206978 4124058 ~ 4137561 (+)
cep135 cep135 coding downstream 259451 4176531 ~ 4196440 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding upstream 61015 3843115 ~ 3844679 (+)
G289363 NA non-coding upstream 166480 3710701 ~ 3739214 (+)
G289351 NA non-coding upstream 217778 3623064 ~ 3687916 (+)
G289240 NA non-coding upstream 411360 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 521812 3383677 ~ 3383882 (+)
G289515 NA non-coding downstream 25194 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 31116 3948196 ~ 3948458 (+)
G289522 NA non-coding downstream 67667 3984747 ~ 4350564 (+)
G289533 NA non-coding downstream 130129 4047209 ~ 4055985 (+)
G289532 NA non-coding downstream 143664 4060744 ~ 4066425 (+)
cnstb LOC108257742 other upstream 1409642 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1763513 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1884431 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2545578 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2641062 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 26414 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 70972 3988052 ~ 3988123 (+)
G289531 NA other downstream 137377 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 331250 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 411752 4328832 ~ 4338299 (+)

Expression


Co-expression Network