si:ch211-63o20.7 (LOC108258100,LOC108439852)


Basic Information

Item Value
gene id si:ch211-63o20.7
gene name LOC108258100,LOC108439852
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2684373 ~ 2702470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946935.2
GCTGAAGGCGGGAAGCTCTGAAAGGTCGCAACTTCCGCTGAGTTCAGAGGCGGATGATTATTTTGTATACATTTGATTTAGATGAAGCGTTTTGCTTACGCGCGAGGAGGAAGcgcatgttattgttttatatgGATGGATATTTAACTAAAGCAGAGCTTCGACAACGTTCACTTGAATCTTTTCATGGctcaaacaaacaaaaccttcATCACCCAAGATGCTGGTGTACCACATATAATCCAGTGAGGGTAGAACCATCTGTCATGGAGCAGGTGTACAGGCTGCAGCGGGAAGTGGGTCGAGGCAGCTATGGCGTGGTATTTGAGGGTCATGTGATGGAGACAGGCTGGTGGGGCTGCAGCGGAGACACGGTGGCCATCAAACGTCTGCCCTGCTGCAGCCCAGAAAGCATTCAACTCTATCTGCAGGAGCTTTGGGCCATGAGAACCACTGCCAGGAGTCACCCGAATGTCATTGCTCTCCACAACTGCCTGCTGCAGACTGGCCCTAAAACTCTGCAGCCACTGAAATCGGACAAGCTGCCGCTGGACCTCGTGGAGAGTGCCCTCAAAGGAAGGGTCGTGGACAAGGAATCTAAAAGTCAAGCGAGAAACGCAGACAAGTCTAGGAGGAGACTGACATCCACAGAGAAGTCGCCAAAACGGTGCTTGGCTCTGTGGCTGGTGATGGAGTATTGCGATGGCGGAGACCTGAACCAGTACATGCTGTCTAGGTGTCCAGACATCCAGAGGAACCATGAGGTGGTTCGGCAGCTCAGTAGCGCAATAACTTTCCTGCATGGACTGGGAATAGTGCACAGAGATTTGAAACCGGCCAATGTGCTCGTCTGCCTAACTAAAACTGGCCCAGTGATCAAGGTGGCCGACTTTGGGCTGAGCAAGATGGTAGAAGGCCCCATGGAAGGAGAGCGGAGCAGACTGGCCCTCTCCTCCACGTGTGGTTCTGACTTCTACATGGCTCCTGAGGTGTGGGCTGGACACAGCTACACAGCCCAAGCAGACATTTTCTCTCTAGGCGTCCTCTTCTGGGCCGTGCTAGAGAGGATCACCTTCCTGGAAGACGGCTCCAACGAGGAGCAGCTAGGAGCGTATGTGGAGAAGGGCCGATGGCTCACACCACTTGGAGAGGCTTTATGTCAGAATCCAGCTCTACAGTTGGTAATCCCCATGCGGGCACGACGGGCACCGCCATTGCCTCCAACTCCGAGCCCTGACTTGTGTGCCCTGCTTTTGGACATGCTGGCGTTTGACCCTGACGCTCGTCCCACCGCGCTACAGCTGCAGGAGAGAGTTTATAGGGCCATAGACACTCACTGATCTCCaaactcttttatttctttacttagATGCAATTTGACTGTCTCCTCCTTCTGCCCATTCTTGTACTCAAAAGCAATTTGACTGTCTCCTCCTTCTGCCCTTTTCTGAGAACTTTACACTGGATGTATTTCCATGCCTCGGTATGGATTATGAGTTCTCAGGCTTTGGAGTACAGGCTTTTTACAAGTTGCACTATTTTAAGTGTATTGTGGATGTGtattgtctgtgtttgcttGTGTGCCTGAATTCCCATGCTGTCGttgttcaaatatttaaaataaatgcttgaaatatc
>XM_026946936.2
GCTGAAGGCGGGAAGCTCTGAAAGGTCGCAACTTCCGCTGAGTTCAGAGGCGGATGATTATTTTGTATACATTTGATTTAGATGAAGCGTTTTGCTTACGCGCGAGGAGGAAGcgcatgttattgttttatatgGATGGATATTTAACTAAAGCAGAGCTTCGACAACGTTCACTTGAATCTTTTCATGGctcaaacaaacaaaaccttcATCACCCAAGATGCTGGTGTACCACATATAATCCAGTGAGGGTAGAACCATCTGTCATGGAGCAGGTGTACAGGCTGCAGCGGGAAGTGGGTCGAGGCAGCTATGGCGTGGTATTTGAGGGTCATGTGATGGAGACAGGCTGGTGGGGCTGCAGCGGAGACACGGTGGCCATCAAACGTCTGCCCTGCTGCAGCCCAGAAAGCATTCAACTCTATCTGCAGGAGCTTTGGGCCATGAGAACCACTGCCAGGAGTCACCCGAATGTCATTGCTCTCCACAACTGCCTGCTGCAGACTGGCCCTAAAACTCTGCAGCCACTGAAATCGGACAAGCTGCCGCTGGACCTCGTGGAGAGTGCCCTCAAAGGAAGGGTCGTGGACAAGGAATCTAAAAGTCAAGCGAGAAACGCAGACAAGTCTAGGAGGAGACTGACATCCACAGAGAAGTCGCCAAAACGGTGCTTGGCTCTGTGGCTGGTGATGGAGTATTGCGATGGCGGAGACCTGAACCAGTACATGCTGTCTAGGTGTCCAGACATCCAGAGGAACCATGAGGTGGTTCGGCAGCTCAGTAGCGCAATAACTTTCCTGCATGGACTGGGAATAGTGCACAGAGATTTGAAACCGGCCAATGTGCTCGTCTGCCTAACTAAAACTGGCCCAGTGATCAAGGTGGCCGACTTTGGGCTGAGCAAGATGGTAGAAGGCCCCATGGAAGGAGAGCGGAGCAGACTGGCCCTCTCCTCCACGTGTGGTTCTGACTTCTACATGGCTCCTGAGGTGTGGGCTGGACACAGCTACACAGCCCAAGCAGACATTTTCTCTCTAGGCGTCCTCTTCTGGGCCGTGCTAGAGAGGATCACCTTCCTGGAAGACGGCTCCAACGAGGAGCAGCTAGGTGAAGAGTGCACATCATATGAGCTGCTGTTTCCAGCACAAAAAGCACGGCAGCCAAGTGTAAAAGCACCctaacatacactgtatggccaaaagtatgcggacacctgacTGTAAGTCTGAAAactggtttatatttttatgttgtaaTACATTAAAAGCCTGCCTTTAATCACCTTATTGACGTTTTAGTTTTCAATACAGTATTAGAG

Function

NR:

description
PREDICTED: serine/threonine-protein kinase pdik1l-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946935.2 True 1638 mRNA 0.51 4 2684373 2694594
XM_026946936.2 False 1318 mRNA 0.50 4 2684373 2702470

Neighbor

gene id symbol gene type direction distance location
znf395b znf395 coding upstream 19408 2656769 ~ 2664965 (+)
LOC113546789 NA coding upstream 30102 2646073 ~ 2654271 (+)
paqr8 LOC100304624 coding upstream 40105 2640280 ~ 2644268 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding upstream 65493 2612201 ~ 2618880 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 209770 2454793 ~ 2474603 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding downstream 23918 2726388 ~ 2747064 (+)
kifap3a kifap3,kifap3a coding downstream 199623 2902093 ~ 2926230 (+)
niban1a LOC108258050 coding downstream 228884 2931354 ~ 2949577 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding downstream 249301 2951771 ~ 2955866 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding downstream 264731 2967201 ~ 2976245 (+)
G288740 NA non-coding upstream 56055 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 76000 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 168998 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 230999 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 358084 2325658 ~ 2326289 (+)
G288789 NA non-coding downstream 61800 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 167126 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 167892 2870362 ~ 2870666 (+)
G288839 NA non-coding downstream 275863 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 489637 3192107 ~ 3193930 (+)
cnstb LOC108257742 other upstream 188321 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 542192 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 663110 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1324257 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1419741 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1241024 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1285582 3988052 ~ 3988123 (+)
G289531 NA other downstream 1351987 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1545860 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1626362 4328832 ~ 4338299 (+)

Expression


Co-expression Network