pla2g7 (pla2g7,LOC108440964,LOC102291497,LOC107553425)


Basic Information

Item Value
gene id pla2g7
gene name pla2g7,LOC108440964,LOC102291497,LOC107553425
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2162431 ~ 2181156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946939.2
AGTTCAggaagtgacgtcaaatcaacatggctgcgcacacagcatcagcagtCGCGCTTCTTCCCATTACATCCATACACAGATTAACGTTTGTTAAATCGAAACACTGACTAGACAGTTCACTAGTTTGAGGAGGAACatatacatcatcatcatcatcatcatcatcacagttagctggttagcttgttgctaacagaAGACGCACATGCAGGCGTCCATGCTTTTCCCCACTTTATAGCTCGGATGCGCGGAGGTGGAAAATGACGTCATTCCGAGCGCCGCCGTCCCACTTCCGAGAAAAGCCGAAAGCAGCAGACAGTCCGTCATGCTGAAGTTGTGTAAAACATGCAAGGTGGATCCACCTGCTCGCTCTTTCACTGTGCCGCTGCCGGCTTCCCGTCCACACCGACGTGTGCTGAGCAGAAGCCGGAAGTCTGAAGATAAGGGGCTGTAGAACTGgctggatcaccagcagctgAGACTGTAGtcctctttcctttcctttcacacaaacactgatcaAGAAGATCCACGACTGGCTTCATTTCAGCAGCAGAAAATAACGTCGGGCAGATTTGAGGAAGTGGAACCACATAAGTTTGCTTAAATGGGAAATTCTGTGGGGCAGAACAGCTTGGGAATTCCTCGAGGAAAAGGACCACACCAGGTGGGATGCACGGACTTAATGGTGGGGCACACCATACAGGGAACCTTCTTCAGACTTTACTATCCGTGCCAAGCTCAAGAGGGTTCAGATGAGCCAGCCTGGATCCCATGCAGAGAATATTTCAATGGCCTTGCTgacttcatgaaaatgagccgAGCACTGAGTGAAAAAATTTTTAAGTACCTCTTTGGGTCTTACAAAATCCCAGCAGCATGGAACGCCTCTTTTAAAACGGATGGAAAATACCCAATAATTATTTTCTCCCATGGTCTGGGAGCATTCAGGACACTGTATTCAGCAATATGTGTCGAGTTGGCCTCCCAGGGCTTTATTGTTGCTGCAGTGGAACACAGAGATGAATCAGCTTCAGCAACCTTCTACTACAAAGAGaagagtgaaacaaaacaaggcCATCACACATCACGGGAAACATTCCGGCCTGTGTCGGATAATTTGGTGGAAGAGTGGATGTACTACAGATCACTAAAAACAGGCGAGAGTGAATTCCTTCTAAGAAACAATCAAGTGAAACAAAGGGCAGATGAGTGCATCAGAGCTTTGGATATACTTACCGACATCAATTCAGGAAAGTCTGTGGAAAATATCTTACTGTCTGAATTTGACTGGTCAAAATTGAAGAACTGTATGGACTTGTGCAGAATAGCAGTCATGGGCCATTCCTTTGGTGGGGCCACAGTGATCGAGTGTTTGTGTAAGGAAGTCAAATTCAAGTGTGGCATCGCGTTGGACACGTGGATGTTTCCCCTTGATGAGGAAATCTTTCCAAGTGTGAAACAgccaatttttttcattaactcCGAGAAGTTCCAGTGGGCCGGGAATATTGTTCGCATGAAGAAATTAGATTCTGCCGTCATTCCAAGAAAAATGATCACCATCATGGGAGCTGTGCATCAGAGCTTCCCAGATTTTACCTTTCTCACAGGTACCTGGACTGGGAAGATCCTGAAGCTGAAGGGAGAAATCGATCCTCACATAGCAATGGATTTGTGCAACAGAGCCTCGTTAGCATTCCTTCAACATCACTTGTCTCTGGAGAGAGACTTCAATCAGTGGGCTCATTTAATTGATGGAAAAGATGATCACCTGATTCCAGGCACCAACATCACTCTGCTTCAGTCCTCcatctaatcatttattaaaaaagaaaaagaaaatacataatGACAGTTTGTAATCTTCATATTTCTGTTGCCGTGCAGCAAACACAGAGATAAAGGTATAATCCCAACATATTATATTGTTGAAccaaatttaatttgaatcgTATAGCTGAATTTTGACTGCGGTGTATGAAAATCCACCAGGTTGGACCACATGaatcatgaatattttaaataagggCATTATTTAATTAGAATTGAGTGAAGTACAGACTCTTATATGGTAAGCGGTTAAAAGAGGTTTAACAAACAGCTTGCATGGTTCTGAACAAGATCAGAGTATTTCCTGAAGTTGTACATTTTACTGTCCCAGCTGGTCTTGTGCACTGTTTCTACAGCTATGTTAAACATTATTAATCTGTTATAATAAGTAACATATTTTCCCCACTGAATATCTGTGACACTGCTGTTACTGCAAAATAAACAGTTCACAGTTAGTTCACTGAAGTAATCAGACAGTCTGAAGATTCAGCTTTAAATGATCTATAATGTCACCTGTGTAAAGCCTTTAAACTATAGAATGCCTACagtcagaataaaaatattttaacttgtcatattttatattttaaacaatttataaattaacccacatattttaatttgaagtgtttttttcacttgtatggaaataaaacatgatccTCAGATGCAAATTCactacaggaaactaatcattGTAACACTGACACATGAAAAGGCTGACTAATAATTAAAGCTATTTCATGCTAGAATTCtttgtataatttaatattaaattttacattaatgTCTATTTTACATATGgtttacatttactttctttttattcattttactcATGTCTTTTGAAAGGAAATAACTGGGCAATAAAAGATGTTTGTGAAATTca

Function

symbol description
pla2g7 Predicted to enable 1-alkyl-2-acetylglycerophosphocholine esterase activity. Predicted to act upstream of or within lipid catabolic process. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); glomerulonephritis (multiple); hemolytic-uremic syndrome; proteinuria (multiple); and type 2 diabetes mellitus. Orthologous to several human genes including PLA2G7 (phospholipase A2 group VII).

NR:

description
platelet-activating factor acetylhydrolase-like

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946939.2 True 2725 mRNA 0.41 11 2162431 2181156

Neighbor

gene id symbol gene type direction distance location
adgrf3b adgrf1 coding upstream 3737 2151234 ~ 2158694 (+)
LOC117599673 NA coding upstream 31160 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 42514 2092475 ~ 2119917 (+)
si:dkey-1j5.4 LOC108257701 coding upstream 246571 1912614 ~ 1915860 (+)
lbr lbr coding upstream 260438 1892769 ~ 1901993 (+)
tdrd6 NA coding downstream 8603 2189759 ~ 2212201 (+)
fzd3a fzd3 coding downstream 154914 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 255542 2436698 ~ 2439040 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 273637 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 431045 2612201 ~ 2618880 (+)
LOC117599781 NA non-coding upstream 11193 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 88550 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 91155 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 166752 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 227648 1934577 ~ 1934783 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 34421 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 144502 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 267266 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 325413 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 400153 2581309 ~ 2608373 (+)
LOC113546780 NA other upstream 20250 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 141168 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 802315 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 897799 1259176 ~ 1264632 (+)
G287892 NA other upstream 918759 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 303880 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1762338 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1806896 3988052 ~ 3988123 (+)
G289531 NA other downstream 1873301 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 2067174 4248330 ~ 4309929 (+)

Expression


Co-expression Network