ppil6 (ppil6)


Basic Information

Item Value
gene id ppil6
gene name ppil6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1786487 ~ 1800918 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946962.2
ACCGCCCGGCTTGTTTACTAGCCGGTTCATGTGGACGCGCAGTAGTTAAACATGGCGTTGGAAATACAGCTGGAAATTGTTGGTTTGTTAAAAACGCATAATTTTCATGCGGCTAAAAGTATTGCAGAGGCACTGAAACAAAACTTCCCAGCTTCATTTGCTGATCCCACCATTCGCCCGATGCTTGAAAGTGACTGGCATGTCTACATAACGGATAAAAGAAAGGAGCTCAGGGGGGAGATGTGGCAGTACCCCGGGAATGTCGTGTGCTGGGTGAACGGCAGTGTGCTGGGTGATGAGAAGCAGCTGTGCAGTTGGGCAGAGAAACAGTGGACCTTCACCTTCTACCGTCCACAAGCGCTTTACGCGGCACTCGCCCAGGAGTGCTACAGCAGACACCTGCACAGCACAGGGcatatatttgtatatatggATGTTGCGATTGGAGGCGAGGCAGTTGGGCGAATGCTGTTTGAGCTTTTCTCAGATCTGTGTCCAAAGACATGTGAAAACTTTAAAGCCCTGTGCACTGGAGAAGCAGGCACCTCTCAAAGCGAACTCACACTTTGCTATAAGGACTCCTTATTCAACAGAATAGTACCTAATGGCTGGGTGCAGGGAGGAGACATTACAGTACAAAGCAGAGGCAATGGTGGGGAGTCCATCTATGGCCCAACATTTGAAGATGAAaatttctctgtgtctcacaaCAAGCGAGGAATCCTGGGCATGGCCAACCGAGGTCCCCACACTAACAGCTCTCAGTTCTACATCACACTACAGCCAGCCCTGTGGATGGACAGAAAATATGTGGCCTTTGGgCAAGTTGTTGAAGGCACAGAGATTCTTAGGAGACTAGAAGAGGTGCCCACTTATAACGAAAGGCCCAAACAAGACTGCAGGATAGTCACATGTGGAGTGTTTGACCCTTGATTGACTGTCATGGTgtaagatttaaaaagaaaacatttcacttGTGCCAGCTGTAGCACACACTCCAGTATCTTCAGATTGTCTTTAACTTCAAAGCCTTCACATTAAAAACATAGCCCTGTAGaagtttctgtgttttactcagctattttcatgttttctccTTCAGTTAGTTTGGTTATTAATCTTCATTCTTCTGACCTGAGTGACTTGCATTAGGACACAACATTGTTTGAAATGCAGTTAAAGAAACAAGTATCATAAACCTAAGCCATAAACATTTCGGGCTTTTGCCTGTACTGTGCCTAACATCTGCAAAGGAGAGCAGAATAAAAATTTGCTTGCCAAATTTGCATGTTCATCCcacaaataatttaattttggtTATATTAGCACTCTAGCAAATTACCTGTTGATCCATTTTTGATGCTACATGACACTGTGTGCCAATATATGATTTGATACTGTATAGGACTGTATATGATGTACCAATATGCACATACccttttaataaagaaaacaaagtcCTGTTTTATAGCCATGTCACTGGCATGCACATACTCTTCCTGG

Function

symbol description
ppil6 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIL6 (peptidylprolyl isomerase like 6).

NR:

description
peptidyl-prolyl cis-trans isomerase-like 6 isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12739 PPIL6; peptidyl-prolyl cis-trans isomerase-like 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946962.2 True 1503 mRNA 0.44 8 1786487 1800918

Neighbor

gene id symbol gene type direction distance location
ak9 ak9 coding upstream 5210 1761934 ~ 1781277 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding upstream 28186 1730526 ~ 1758301 (+)
prg4b LOC108257844 coding upstream 137937 1638264 ~ 1648550 (+)
c19h1orf112 c25h1orf112 coding upstream 163025 1601450 ~ 1623462 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding upstream 191135 1592564 ~ 1595352 (+)
enah enah coding downstream 24067 1824985 ~ 1889193 (+)
lbr lbr coding downstream 91851 1892769 ~ 1901993 (+)
si:dkey-1j5.4 LOC108257701 coding downstream 111696 1912614 ~ 1915860 (+)
tnfrsf21 tnfrsf21 coding downstream 291557 2092475 ~ 2119917 (+)
LOC117599673 NA coding downstream 321643 2122561 ~ 2131271 (+)
G288171 LOC108257608 non-coding upstream 88320 1695908 ~ 1698167 (+)
G288134 NA non-coding upstream 187894 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 219170 1566196 ~ 1567317 (+)
G288048 NA non-coding upstream 311038 1473930 ~ 1475449 (+)
G288047 NA non-coding upstream 313390 1472713 ~ 1473097 (+)
G288192 NA non-coding downstream 133659 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 194542 1995460 ~ 1995679 (+)
G288225 NA non-coding downstream 225951 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 270116 2071034 ~ 2071276 (+)
LOC117599781 NA non-coding downstream 346297 2147215 ~ 2151238 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 426371 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 521855 1259176 ~ 1264632 (+)
G287892 NA other upstream 542815 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 888077 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 195202 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 332240 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 684118 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2142576 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2187134 3988052 ~ 3988123 (+)

Expression


Co-expression Network