spata18 (spata18,LOC107683994,LOC107718421,LOC107601933)


Basic Information

Item Value
gene id spata18
gene name spata18,LOC107683994,LOC107718421,LOC107601933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3305053 ~ 3314463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946968.2
ATGGCAGACACGTTGCGGAGGCTGGTGAACACTTCATCCTACAGCATCCTGCAGCAAAAACTAGAAACCTGGTACAAAGACTATCATGTGATCTCATGTGACCAGAACCTGAACCGGTGCTGTGAGCTAGTGGAGCTCACCTCAAATATCCAGGGGCAGCTGTTCACTATACTCAACCTTACTGCACAAGAAGGCGGTCACTATGCAGGAGTGGACACGCTTAAATCCCGCTTGCTGCCATGGCTTGGTACATGCTTCACCATGGCAAGCGCCTCTGTCTCTTCAGACACCAGTCTCAATCTTATTCAGGATAATGTGGAGAAGGAGCGAAGGATCCGTGAGCTGTCGTTGTCCCATGAGAGTGACATGCAGAAGATTGAGGACCAGCTCTGCTCTACACGCATAGAGCTGGATTCTGTCAAACAGCAACTTGCTGATGCTAAGATTGAACTGGACTCCACCAAAAACAGATCAGGGACTACCCTTCTTGCCACAGAAGATGAGATACTGCACCTGAAAGCAGAgtTGCGGATGGCCTATGATCAGGTGGACCTCTATAAGAAGAAGCTGGACGTGCTGGAGGACTATGAGAGGCAGGTCAGATTACTGAGAGATGAGGTCACATTTCTCACTGCTGAGAAATCCATGCTACAggaaagGCTGGTGAGGAGTCGTTCTCCCAGTCCTCTTCCCCGGCGGAGTCGTAACAGCAGTCCTGTGAGGAGCGAGTCTCCTACACGTGCCCAGCTCACCAGCTCATCTCGCCATGCCCGGCTTGTGTCACGCTTCTCTGACCTGTACGCCATTGAACGGCTGGAGGCCCAGAGCCTCCTCCGCCGCTACATCGACGACTTGGAGAAAGTGCAGAGGATCATCTTCATTGCTGCGGTGGAATCATTTCAGGCAGCTAAATTGGCCTATCGTCAGTTTAAGCTGCGTGTGAGGAAAACTCTTTCTCCTACACACGTGGGTCCTGAGAGTCTGGAGGATGCCGTAGTGGACTACATCGTCAGAAACCTTGACCTTTACGATGTGCAGACAAGTGTTAGTGATGTGATCAACTCAATGAATGTGAACCCACGTATATCCTTCCCTCCAGAAGTGGACTTTATGCTCATCAGTAGTTTCATCAGAGAGATGTGTAGAATTGCCTTCGACATGCAGACGCTGGATCTTCCCCTAGACCTTGCCTTTAGCTCTGATGGAGAACTCTACAATGACATCAAgtACAGGCGTAGTTACGATTCAGAGTTCACTGCGCCACTGGTGGAGTATCACGTGTGGCCTGCACTGATGGAGGGAGACACAGTCATAGTGAAAGGAGAAGCTGTCACCAGGAGAGGGGCattgtggaggAGCCGAAGCCGCAGCTGCAGTCCAGTTCGCTCTCGCTCAGGAAGCCCCAGCCGCACACTTATGTCCAGTCGTAGTCGGAGCCCGTCCCCTGGACGTCTCTCAACCAGTCGActgtaaatttcacatgtgaagcCACTCAGAAGGTGCTGAAAAGACTCTAACTTCAGATAAATCCCATTACCATTAATGATATTTtccttttgtctatttttttctctttacacaAAGCCAATGTCAGGGGCATCAGATGGACACCAGGAATAAGCTTTAATAAATCAGGACTACTTCCACAGTCTACATGCTTAGTACATTACACTGTAGccttaaaataacaataaaggtCTTCAGTCTTTGGCCTATAGCTATGGCTAAGGTGCTTTATCTGGCAAAGACCGCAAACTTTTTAAAGGTGCTATGGTTTCAGTCTTtcctatacagtatatgtgattttgtgtgtggaTAGTGTTCATTATTTAGacagtatgttgttctttacAACAGGGCGGAGTCTCTGTAGTGTAGCCGTCTCCACTCCTGCACAGTAGCACTTTGAGATCTTTCTCTGATTCTACTGCAGAAGTacagtgtgtgtcctgtgtgatagatttttatattaaaattccaggcagcattattttttatagttGTCCCAATATTTGTGCTAAATTTCTCCCAATCAAAAAGcctaatcatttaaaatacttaCTTGGTTACTTAATTACGtgaacattttcaaaatgttggcattttttaaaagtataataCAGATAATAGACAATAGCACTACTTCCTTAATAATCATTGATAATCATTCTACCAGTTAAATGTAATGAGCATGGGTTCCttattatatttgcataaatttatagcagaatgcatgttttttttaatacattaatgtaTTTTCTGCATGCTTTGCCACTTTACACTTGTGTTAGACCACTGTGTTGGCAATGTCACATCACTGGTGCTAAAGTGCTAAAGTTTACTCATCAAGACCACTTCACCATCACATTGATCCAAATGGATTgtggttttaaaatgtttactgttGTCAACATCAGGGTGCTCATTGAGGTGCTCAGcgtttttccttttatttgaa

Function

symbol description
spata18 Acts upstream of or within response to steroid hormone. Predicted to be located in cytoplasm. Predicted to be active in mitochondrial outer membrane. Is expressed in floor plate; ovary; peripheral olfactory organ; pronephric duct; and spinal cord. Orthologous to human SPATA18 (spermatogenesis associated 18).

NR:

description
mitochondria-eating protein

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0035694 mitochondrial protein catabolic process biological_process
GO:0035695 mitophagy by induced vacuole formation biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946968.2 True 2461 mRNA 0.45 12 3305053 3314463

Neighbor

gene id symbol gene type direction distance location
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 27085 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 43003 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 160319 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 163336 3135733 ~ 3141717 (+)
slain2 slain2 coding upstream 176933 3101394 ~ 3128120 (+)
rasl11b rasl11b coding downstream 84652 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 240274 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 403643 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 417179 3731642 ~ 3753431 (+)
kita kit coding downstream 466927 3781390 ~ 3808749 (+)
G289121 NA non-coding upstream 16512 3279406 ~ 3288541 (+)
G288927 NA non-coding upstream 111123 3192107 ~ 3193930 (+)
G288839 NA non-coding upstream 324848 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 388243 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 434387 2870362 ~ 2870666 (+)
G289134 NA non-coding downstream 26938 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 49765 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 49775 3364238 ~ 3369854 (+)
LOC113546887 NA non-coding downstream 50815 3365278 ~ 3365402 (+)
LOC113546886 NA non-coding downstream 53185 3367648 ~ 3367772 (+)
cnstb LOC108257742 other upstream 809001 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1162872 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1283790 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1944937 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2040421 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 629031 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 673589 3988052 ~ 3988123 (+)
G289531 NA other downstream 739994 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 933867 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1014369 4328832 ~ 4338299 (+)

Expression


Co-expression Network