gsx2 (gsx2)


Basic Information

Item Value
gene id gsx2
gene name gsx2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3718106 ~ 3720488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946969.2
GCTCCCTTTTGTTGACCCATCAAACATAAGCTCCTTCTCAGCTCCCGAGGGCTTCAGAAGACAGCAAAGAGCACTGAATATTCTGCACACCGGCTGTAATCCCGGGTTGGCATCATCACAAGAAGCCATGTCCAGGTCTTTCTATGTCGACTCACTCATCATCAAGGACTCTGCCAGACCCGCGCCTCTGGGCGAGCACACAGCGCAGGACTTCTTCATCCCCATCGGCATGCACGCACCGGGTGTGATGGGTGTCCCTGCGGCTGCATGTCCGTCCCGGAAAAGCGGAGCTTTCTGCGTCTGTCCGCTCTGCGTCGCCTCGCATGTGCACTCGCCTCGGGCTGGCCTGCCTCTGCTCAAGGCTCCAGGATTCCCGAGCGGAGATGCGCCGTACTGCCAACGGCTCGCACAGCAACACAACACCGCGCCTGTCTGCACGCCCCCTGCTTACAGCGTCACTGACCCACGGAGATACCACTGCCTCTCCATAGGTGCGTCGGATAACGGCCACGTTCAGAACGGAAAGCGCATGCGCACGGCCTTCACCAGCACGCAGCTTCTCGAGCTCGAGCGCGAGTTCTCCTCTAACATGTACCTGTCGCGCCTGCGCAGAATTGAGATCGCCACATACCTCAACCTGTCGGAGAAGCAGGTGAAGATCTGGTTCCAAAACCGGCGCGTCAAGCACAAGAAGGAGGGCAAAGGCGCGCAGCGGAGCGCGCACGCGGGGTGCAAGTGCTCTGGAAACCACGCACCCTACCCGCGATCAGAGGACGAGGAGTCCCTCTCACCCGCCTCAGCCACCGAGGAGAAAGAGGGGTCGCCCATTTAACAGAGAAATTAGAGACACATAAGGACTCGATGATAACTCTAGGACTATTCACTCTAACTAGCACTTAGTCTTCCGTACGCACGGATCCTTGGACGTCTCCGAAAACAAGTAGATTCAGAAAAGTGGATGTTTATGGTCTTATTCTCTTTATCCGTCACTCTTtctccaaaaaaataataataataaataaataaatacagcaaactCCCCAGGGttgcatttacattcatgtgGTTgaaattaaccttttttttttgtatacatgTCCATCTGAGCTTAAACAGTGTAGCTGTGATTTTAACCCTGAGgattttgctgtttggtttttaCAACAAAAGTGACGTCTGCGGATTTTTCTCATGCGTCTTTTCCACCTAAAACAAGCTTACAGTCTGTAACCAATGTGCTTGAAATGATAAATGTTTGGCGCATTTGTGCAGAAAACTGTTGCGCAGTGTAAATAAACGGGTGCTAAATGCTTGTGTTAGATATTTCCAAAACTGTGATTTTTCTGCTCGCCctaattttatgtttataataagcaaaaaatatgtatatgtgtatatttgtatttatttaaataaaaaaaa

Function

symbol description
gsx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human GSX2 (GS homeobox 2).

NR:

description
GS homeobox 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09310 GSH; homeobox protein GSH

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946969.2 True 1422 mRNA 0.49 2 3718106 3720488

Neighbor

gene id symbol gene type direction distance location
fip1l1a LOC108257999 coding upstream 133101 3554737 ~ 3585005 (+)
rasl11b rasl11b coding upstream 315431 3399115 ~ 3402675 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 403643 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 440138 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 456056 3258173 ~ 3262050 (+)
pdgfra pdgfra coding downstream 11154 3731642 ~ 3753431 (+)
kita kit coding downstream 60902 3781390 ~ 3808749 (+)
LOC117599795 LOC107568747 coding downstream 158334 3878822 ~ 3885661 (+)
mgst3a mgst3 coding downstream 176527 3897015 ~ 3901866 (+)
LOC113546823 LOC108257899 coding downstream 185206 3905694 ~ 3917080 (+)
G289351 NA non-coding upstream 30190 3623064 ~ 3687916 (+)
G289240 NA non-coding upstream 223772 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 334224 3383677 ~ 3383882 (+)
G289145 NA non-coding upstream 348252 3364238 ~ 3369854 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 122627 3843115 ~ 3844679 (+)
G289515 NA non-coding downstream 221786 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 227708 3948196 ~ 3948458 (+)
G289522 NA non-coding downstream 264259 3984747 ~ 4350564 (+)
G289533 NA non-coding downstream 326721 4047209 ~ 4055985 (+)
cnstb LOC108257742 other upstream 1222054 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1575925 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1696843 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2357990 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2453474 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 223006 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 267564 3988052 ~ 3988123 (+)
G289531 NA other downstream 333969 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 527842 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 608344 4328832 ~ 4338299 (+)

Expression


Co-expression Network