pfas (pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297)


Basic Information

Item Value
gene id pfas
gene name pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3991667 ~ 4016550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946977.2
TACGGGTGGTAAAAAGTTTCGGACACGTGGGTTGAGTACAGGACTGCCTGCACTGGTCAGGAGGTCTgcatactacactgtactacaccaTATCATCTTATAGCACAGTATACTGAGCTGTCAGCTTCATCTCACACCAACTCGCCCAGTCACTGAGCACCTGGAAGGATCATGTCAGTCTTGCGATTCTACAGGAGGGCAGACGGTGAAGGTGGGCGGAGCCTGCAGAGGGTCAAACAGCTCTATCCACAGGTCACCATAACCACTGAACTCTGCTACAATGTGGAAGTGAATGGTGCTGACTGTGTGAGTGGGGAGCAGAAGGATATCCTGCGCTGGTTATTTACTCCTCCTCAGTCTTCAGGGCTGTCTGATGAGCCCACTCTCAGAGCGTCGATGCCAGGAGAGAGCCTGGTGGAGATTGGCCCCAGGCTGAACTTCTCCACTGCATGGTCCACAAATGCCGTGTCCATCTGCCAGAGTGCAGGCCTGAGTCAGGTGACCAGGGTTGAGCTGTCTCGCAGGCACTTCATCAAGGATGAGCTGGATACGCTGAGGAAAGATGAAGAGATGGAGAAGTTAATCAGCCTCTTGTACGATAGCATGACTGAGTGTATCTACCCCTATCCCATCACATCTTTCTTTGTGGACGTCCGGCCTCAGGAAGTGTTTGAGGTTGACATTTTAGGAAAAGGTCGTGCTGCGTTGGAGAGGGCCAACGATGAGCTTGGACTAGCTTTTGACTCCTGGGATCTGGACTACTACACAGCATTGTTCCAGAGGGTGAAGAGAAACCCAACCAGTGTTGAATGCTTTGACCTGGCACAGTCCAACAGtgagcacagtcgCCACTGGTTCTTCCGAGGCCGGATGGTGATTGACGGACAGGAGCAGAAGGACACTCTTTTCAGCCTCATTATGGGCACCCAGCAGCACAGCAATCAGAACAATGTCATCAAGTTCTCCGATAACAGcagtggtATTAAAGGCATGGAGCTGGAGTGCATGCTCCCCACTGACCCTGCGCAGGCCAGCTGCTACAAGACCAGACACACCACCAGACACGTCATCTTcactgcagaaacacacaacTTCCCCACAGGTGTCGCTCCTTTTAGCGGTGCTACTACAGGTACTGGCGGGCGAATCAGAGACGTACAGAGCGCAGGCCGAGGTGGACACGTGATTGCAGGGACTGCTGGGTACTGCTTTGGTAACCTCCATATCCCAGGTTTTGCCCTTCCATGGGAGGAGGGTGGTTGGGAGTACCCTTCCAGCTTTGCCCCTCCTTTGCAGGTGGCTATTGAAGCCAGTGATGGAGCTTCAGACTACGGAAACAAGTTTGGAGAGCCAGTGCTGGCAGGCTTTGCCCGGTCCTTTGGAATGCGCTTGGCCAATGGTGAGCGTCGAGAATGGATTAAGCCAATAATGTTCAGCGGTGGACTGGGCTCCATTGAGGATGAGCATGTAAAGAAAGAGGAGGCAAAGTCAGGTATGGAGGTGGTGAAAATAGGAGGCCCTGTGTATAGGATTGGTGTAGGGGGAGGGGCTGCGTCCTCTATACAGgtaCAGGGTGATAACTCCAGCGATCGTGATTTGGGTGCGGTTCAAAGAGGAGATGCTGAGATGGAGCAGAAGATGAATCGGGCTCTAAGGGCATGTCTGGAGAGAGCTGCAGGAAACCCCATTTGCAGTATTCATGACCAGGGTGCAGGAGGCAATGGAAATGTGTTGAAAGAGCTGAGTGAGCCTGCTGGAGCTGTCATCTACACCAGCAAATTTAAAAGAGGTGATCCCACCCTCAGTGTTTTGGAGTTGTGGGGGGCTGAGTATCAGGAGAGTAATGCTCTGTTGCTCCGCCCATCTGACCGGAGTtttctggagagagtgtgtcAGAGGGAGAAATGCCCTGTTGACTTTGTGGGTCACATCACAGGTGATAGTAAGATTGTTCTTGTGGATGACATCTCTAGCTCTGGCAATGCCATGATTGGTGGGCGGAACCCTGTGGATTTGGAACTTGATTGGGTATTGGGAAAGATGCCTCAGAAGGAGTTCAGGCTGGACTGTGTGCCTTCTTGTctgcagcctctctctctccctccaggACTTTTGGTTTTGCCTGCTCTCGAGAGAGTTCTTAGACTGCCCGCTGTGGCCAGCAAACGCTACCTCACCAACAAGGTGGATCGCTCTGTGACGGGATTGGTGgcacagcagcagtgtgtaggACCCCTCCACACCCCACTGGCTGATGTGGCTGTGGTTGCTCTATCACCCTTCAGCCTCCAGGGTGCTGCAACAGCAATTGGGGAGCAGCCAATTAAAGGCCTTGTTTCCCCGGAGGTTGGAGCTCGAATGGCTGTGGGCGAGGCCCTCACCAATCTAGTGTTTGCACGTGTCACTGCTCTCAAGgaTATAAAGTGCAGCGGCAACTGGATGTGGGCGGCGAAGTTGCCAGGTGAAGGGGCGTGTCTGTGGGAGGCGTGTCAGGCTATGTGCAAGGTCATGGGTCAGTTGGGCGTTGCTGTCGATGGGGGAAAGGACTCCCTCAGCATGGCTGCTCGTGTTGGTGGAGAAACCGTCAAAGCaccaggTTCTTTGGTCATCtctgtgtatgctgtgtgtCCTGATATCACTGCTACTGTCACGCCTGACCTGGATGACCCAGAGGGCAAAGGTGTATTGCTGTATATTCCTGTGAGTGTGGGTAAATACAGGCTGGGTGGCTCTGCTCTTGCTCAGTGTTATGGTCAGCTGGGAGATTGCAGTCCAGACCTGGATCATCCTGACCTTCTCTCAGCCTGCTTCACCACCACCCAGACACTCATCGAagaTCGTCTGCTGAGTGCAGGGCATGATGTCAGCGATGGAGGACTCATTACCTGTCTGCTGGAGATGGCCTTTGCAGGAAATCGTGGGATAGAAGTTGACTTGCCTTTTGATGGAGTTGAAGtgatGGAGGCTTTGTTCTCGGAGGAGCTGGGTCTGGTGTtggaggtgtgtgagagtgatgtGGAAAGTGTGCGTCAGCGGTACACACGCGCTGGGCTGTGCTGCTACAAGATTGGCACCACCTGTGGCTTCGGACCTGACTCTATGGTCAAGGTGAGCCTGTGTGGACAGGAAGTGCTGCATGAGCGTCTTCCCACTCTCAGGGCATTATGGGAGAGCACAAGCTTCCAACTGGAATGTCTGCAGGCCAATCCACTGTGCGTACAGCAGGAAGAGCAGGGGCTCTCCAACCGCACCCAGCCATACCTCAAACTGACATTTGACCCTGCTAAAACACAGATAGCAAAAGACCTAGCTGTGGGCAAGCCTCGTGTTGCAGTCATCCGTGAGGAAGGCAGCAATGGCGATCGAGagatgtctgtctctctgtatatgGCTGGATTCGAgGTGTGGGATGTCACGATGCAGGACCTGTGCTCCGGCTCCACAACCCTTGACCCATTCCGAGCTGTTGTGTTTGTAGGCGGCTTCAGTTACGCTGATGTGCTGGGATCAGCCAAAGGCTGGGCGGCTACTGTCACCTTTAACCCCAATGCCCGGGAGGAGTTTGAGCGTTTCCGGCGTCGTAATGACACACTTAGTCTAGGGGTGTGTAATGGCTGCCAGCTCCTGGCTCTGCTAGGTTGGGTGGGTGGAGCACAGGATGGAGGCTCTGAGGTGGCCTTGACCCATAATAAGTCAGGTCGGTTTGAGTCCCGCTTTGTGAGTGTCGGCATTCTGCCTTCTCCAGCCATTATGCTGAAGGGCATGGAGGGATCTGCCCTGGGTGTGTGGGTTGCCCATGGAGAAGGTCTGATGCAGTTCCGCTCCCCTGAAGCACAGCAGAAGCTGATCAGTGCATCTCTGGCACCACTGCGCTACGTGGATGACTCCGGAGCCCCCACTGAGACCTACCCCATGAACCCAAACGGCTCTGCCCTGGGCATAGCAGGTATCTGCTCGCCTGACGGGCGCCACCTGGCCATGATGCCCCACCCAGAGCGCACGGTGCTGGGCTGGCAGTGGGCCTGGGCACCTGCACCTCTCAGAGCCTCACTGCGTGCCTCGCCTTGGCTCCGCATGTTCCACAATGCCGCTGTGTGGTGTCAGAGCGAGGGGTCGTCATCATAGTGATTATGGATATTTTTTCACTGCACTGTTACATCTGTGAAAGCATCCTGAAAGAAAGTGATTATTTGTATGGAGGATTGAGAAGAGTTAGATTTACATAGTTATGTAAAAGgctaaacctaaaaaaaaaattaatacaaacatGGGTAACAAGAGTcaaactgaagatggctgcattCCAAGTAAAACACTAGATATTTGGCAGATGGCTGCATTCCAAGTAAAACACTAGATATTTGGCAATCTAACTAAGATATTTAGCTAACTTGTGTCCTCAAAATTGTGTTAAAGAAATGCTCTTACATGACCGCAAAGGccagggagcaaaattggccgtgctctctgggtgagagGGGTGGCATACGCTCTctaccctgtcaatcacagcaatactagccaatcataggcatctgtgggctcatgtatgcggaagaagGTAGAcagtgctttcctccaagtgtgttacgctgtcCTGTGACGTGGCATGATCAGCAGTGGCTGTACTAGTAGTtagcttcacgtgtcttggaggaagcatgtgttagctttcaccctccctggGTGGTAGTTGTTGTATGATAGGGAAGAGCTTGCTGGTGGATGGGAATTGACAGGTCATGAAAATGaggtgaaataaataagaattaaaaaaaaaagaaagaaagaaatgattttgTGGCTACTGTGATGTGTTTACTTGACAGAACCCAGCAATAAGCACCAAACTgtgctaaatgtaaatgtgattttgattgattaaaaatgttattattaatgtcaaTATTGTAACCTCATACAATATCTCAAAAAGTCTAAGCTTTCATCTTCCAGCAGTTTGTTGTTCTGGGCCATTTTTGTGCAAGTTGTGAATATTTGTCCACCAGCACACATTTACAGATGAACTGTGAGGAGAGTTCAGGTGATGGCAATAACAAGAATTAGCCAAAAAGCCACAATGAGTAGTCCTGTTTTACAGAGACTTCATGCACCAAAACTGCTGGAATCAAGAACGAGTTAGAAAAACGTTTTGTGATTTGCAGGATATGTGAGgatatatatgttttatgtatCTCTCAGTTATATACACCAAGTTTGATATTTCATGACACTACTTCAAAGatgaaataataaagtaaacTTTTGACAAGAA

Function

symbol description
pfas Predicted to enable ATP binding activity; metal ion binding activity; and phosphoribosylformylglycinamidine synthase activity. Predicted to act upstream of or within 'de novo' IMP biosynthetic process and glutamine metabolic process. Is expressed in brain; digestive system; eye; heart; and muscle. Orthologous to human PFAS (phosphoribosylformylglycinamidine synthase).

NR:

description
phosphoribosylformylglycinamidine synthase

GO:

id name namespace
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0004642 phosphoribosylformylglycinamidine synthase activity molecular_function

KEGG:

id description
K01952 PFAS, purL; phosphoribosylformylglycinamidine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946977.2 True 5275 mRNA 0.51 29 3991667 4016550

Neighbor

gene id symbol gene type direction distance location
LOC113546823 LOC108257899 coding upstream 74587 3905694 ~ 3917080 (+)
mgst3a mgst3 coding upstream 89801 3897015 ~ 3901866 (+)
LOC117599795 LOC107568747 coding upstream 106006 3878822 ~ 3885661 (+)
kita kit coding upstream 182918 3781390 ~ 3808749 (+)
pdgfra pdgfra coding upstream 238236 3731642 ~ 3753431 (+)
hook1 hook1 coding downstream 8132 4024682 ~ 4045273 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding downstream 85119 4101669 ~ 4115455 (+)
aasdh aasdh coding downstream 107508 4124058 ~ 4137561 (+)
cep135 cep135 coding downstream 159981 4176531 ~ 4196440 (+)
nmu NA coding downstream 219277 4235827 ~ 4238921 (+)
G289515 NA non-coding upstream 17652 3942274 ~ 3974015 (+)
G289517 NA non-coding upstream 43209 3948196 ~ 3948458 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding upstream 146988 3843115 ~ 3844679 (+)
G289363 NA non-coding upstream 252453 3710701 ~ 3739214 (+)
G289351 NA non-coding upstream 303751 3623064 ~ 3687916 (+)
G289533 NA non-coding downstream 30659 4047209 ~ 4055985 (+)
G289532 NA non-coding downstream 44194 4060744 ~ 4066425 (+)
G289530 LOC108257764 non-coding downstream 45268 4061818 ~ 4073966 (+)
LOC117599777 NA non-coding downstream 222476 4239026 ~ 4243951 (+)
G289615 NA non-coding downstream 248833 4265383 ~ 4334959 (+)
trnad-guc_14 NA other upstream 3544 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 8973 3943494 ~ 3982694 (+)
cnstb LOC108257742 other upstream 1495615 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1849486 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1970404 1996120 ~ 2021263 (+)
G289531 NA other downstream 37907 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 231780 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 312282 4328832 ~ 4338299 (+)
LOC113545190 NA other downstream 584505 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 925401 4941951 ~ 4979400 (+)

Expression


Co-expression Network